Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00943 ATGGAGCTTGTGAATAATAGCCAAAAGCTAAAACAGCAGCACCAACAGCATTTTCATGTTTTGGTGGTAGATGATAGTGTCATAGACAGGAAGCTTTTGGAGAGGCTCCTAAGAGATTCTTCATGCAAAGCTACCTTCGTGGATTCTGGAGACAAGGCTTTGAAATATCTTGGCCTGCTTGGTGATAATGCTTCCTCAACTTCTAATTCAGAGTCATTGCAACAGAACGGAATCAAAGTGAATTtgatcatgacagactactgcatgccaggaatgagtggctatgatttactaaaacgaatcaagCTGCAGGGATCTTCTTGGAAAGATGTACCTGTCGTCATAATGTCATCAGAAAACGTACCATCGAGAATCACCATGTGCTTGGAAGGAGGGGCAGAGGAGTTTCTATTGAAGCCTCTTCAGCAATCAGATTTGAAAAAGCTTCAGCCATGCTTTCTGAAATCCTTTGAACAACAATCTGCTGACAGATCCGTAGCTTCTCACAATGACAATGATAACGAACGAACGGCATTGTCTCCGGAACATGGTTTTAAATTGCAGTTTGTATCTACAATTGCAACTACAATATTACGATTTTGGAACTCTCTATAA 615 0.3675 MELVNNSQKLKQQHQQHFHVLVVDDSVIDRKLLERLLRDSSCKATFVDSGDKALKYLGLLGDNASSTSNSESLQQNGIKVNLIMTDYCMPGMSGYDLLKRIKLQGSSWKDVPVVIMSSENVPSRITMCLEGGAEEFLLKPLQQSDLKKLQPCFLKSFEQQSADRSVASHNDNDNERTALSPEHGFKLQFVSTIATTILRFWNSL 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00943 204 SMART REC_2 18 150 IPR001789 GO:0000160
Cca05g00943 204 PANTHER TWO-COMPONENT RESPONSE REGULATOR ORR4 7 175 - -
Cca05g00943 204 SUPERFAMILY CheY-like 18 176 IPR011006 -
Cca05g00943 204 Gene3D - 19 194 - -
Cca05g00943 204 Pfam Response regulator receiver domain 20 148 IPR001789 GO:0000160
Cca05g00943 204 ProSiteProfiles Response regulatory domain profile. 19 154 IPR001789 GO:0000160
Cca05g00943 204 CDD REC_typeA_ARR 20 149 - -
Cca05g00943 204 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 175 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00943 Cca-Chr5 25181850 25185751 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00943 13 167 Response Regulator Gene Family AT2G41310 53.205 1.11e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca05g00943 Response_reg 1.5e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00943 K14492 - gmx:100790440 314.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00943 05 25181850 25185751 Cca05g00943 05 25181850 25185751 ECH