Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00938 ATGTCAAAGTCTCCCTCTCATGAACAGCGGCAATCCATTTATTCTGCCTCTCAGACTTGGGATTTTAATGAGGCAACAGGAATGGATGATGCAGAATCTACAATGGCGGCAGTTGCTAATTTTGTGGAGCAACTGCATGCCAACTTGTCATCACCAGTGGAGAAAGAAAGTATTACAGCACGCTTACTAGGTATTGCCAGGAAAAGAAAGGATGCTAGAGCACTCATTGGTTCTCATGCCCAAGCTATGCCATTGTTCATAAACATTCTCAGAAATGGAACCTCTCTTGCAAAAGTTAATGTTGCTTCCACTCTCAGTGTCCTGTGCAAAGATGAAGAGCTGAGGTTAAAAGTACTTCTTGGCGGTTGTATCCCACCATTATTGTCACTTTTAAATTATGAATCCACAGATGCCAGGAAGGCAGCAGCTGAAGCAATATATGAAGTTTCCTCAGGTGGTCTTTCTGATGATCATGTTGGTATGAAAATTTTTGTTACAGAAGGTGTAGTTCCAACATTGTGGAATCAACTAAATCCAAAGAACAAGGAAGACAAAATTGTGGAGGGTTTTATTACTGGAGCATTAAGAAATCTTTGTGGTGACAAAGATGGCTATTGGAAAGCAACATTAGAAGCCGGAGGTGTGGATATCATAGTAGGGCTCTTGTCTTCTGATAATGCTGTTTCTCAGTCAAATGCAGCTTCTCTATTAGCACGTTTAATGCTGGCATTCAGTGATAGCATCCCCAAAGTAATAGACTCTGGGGCAGTCAAAGCTTTACTTCAGCTTGTTGGTTGGGAAAATGACATTTCTGTAAGAGCTAGTGCTGCTGATGCCCTAGAGGCCCTCTCTTCAAAGTCTACCAACGCTAAAAAGGTCATTGTTAATGCAGATGGTATTCCAATCCTCATTGGAGCTATTGTTGCTCCTTCTAAAGAGTGTATGCAAGGTGATGGTGGCCAGGCTCTGCAGGAGCATGCAACTCGAGCTTTAGCCAACATCTGTGGTGGCATGTCCGCTTTAATACTATATCTTGGAGAAATTTCACGTTCTCCTCACCTTGATGCTCCAGTTGGTGATATCATTGGCGCTCTTGCTTACACACTCATGGTCTTTGAGGAAAAAGTTGATGACGATGAGAAACATTTTGATGCAACTCAAATAGAGGATATTCTAGTAACTCTTTTAAAGCCTCGAGATAACAAACTGATTCAAGAGCGTGTCCTCGAGGCTATGGCTAGCCTATATGGAAACATCTGTCTCTCAAAGTGGCTCATTCAGGCAGATTCAAAGAAGGTTCTTATTGGACTTATAACCATGGCTGCCACTGATGTGCAAGAGTATCTTATACTTTCATTGACAAGCTTGTGTTGTGATAAGATTGGAGTATGGGAGGCCATAAAAAGAAGAGAAGGTATCCAATTACTAATATCATTGCTTGGATTATCCAGTGAGCAGCATCAAGAGTACTCAGTTCAGTTACTAGCAATTTTAACTGACCATGTTGATGACAGTAAGTGGGCAATCACTGCTGCTGGAGGGATTCCACCGTTGGTGCAGTTGTTGGAGACAGGATCACAGAAAGCAAGAGAGGAAGCAGCAAATGTTCTGTGGAGTTTATGCTGTCACAGTGAAGATATCCGTGCTTGTGTTGAAAGTGCTGGAGCAATCCCAGCATTTTTGTGGCTTCTCAAGAGTGGTGGACCAAAAGGACAGGAAGCTTCTGCTATGGCACTCACAAAGCTTGTCCGAGTAGCTGATTCTGCCACAATTAATCAGCTATTAGCATTGCTACTAGGGGATTCTCCAAGCTTGAAAGCCCACATAATCCGAGTTTTAGGTCATGTTCTTACTATGGCTTCGCAGAATGATCTCCTTGAAAAGGGTTCTGCAGCTAATAAAGGCCTAAGATCTCTAGTTCAGGTCCTCAATTCATCAAATGAGGAAACCCAAGAATATGCAGCTTCTGTTCTAGCTGATTTATTTATCACAAGACAAGATATCTGTGATAGTCTTGCAACTGATGAGATTGTACTTCCTTGCATGAAGCTTTTGACTAGCAAAACTCAAGTTGTTGCCACTCAGTCAGCTCGAGCATTAAGTGCTCTGTCTCGTCCAACAAAGAACAAAGCTGCAAATAAGATGTCTTATATTGTAGAGGGTGATGTTGAGCCACTAATCAAATTAGCTAAAACATCCTCTGTTGAAGCTGCTGAAACTGCTGTTGCTGCATTGGCCAATCTTCTCTTTGATCCTTTTATTGCTGCTGAGGCTCTAGCTGAAGATGTTGTTTCAGCTTTAACAAGAGTTCTAGCAGAAGGAACCTTGGAAGGTAAACAAAATGCATCTCGTGCACTTCATCAATTATTGAAGCATTTTCCAGTAGGTGACGTTCTCAAGGGGTACGCTCAATGCCGTTTCACTGTGCTTGCACTTGTTGATTCCTTAAGAGCTATGGACATGGACGGAACTGATGCTGCAGATGCTTTAGAAGTAATTGCACTGCTAGCCAGGACAAAACAGAGTGTCAACTTCACTTACCCTCCATGGTCGGCTCTGGCTGAAATACCATCAAGCTTAGAACATCTTGTCTACTGCCTGGCTGAGGGCCCTTCTCTTGTGCAAGACAAGGCAATTAAAATTCTATCTAGACTTTGTGGGGATCAACCAGTTGTTCTTGGTGATTTGTTATCTTCTAGTTCCAGATCCATTGGTTCATTGGCTGACAGAATAATGAACTCCTCCAGTCTAGAAGTAAAGATTGGAGGGGCTGCCTTACTAATTTGTGCTGCAAAGGAGAAGAAAGAGCTTTCAATGGATTCACTTGATGCTTCTGGGTATCTAAAACCATTAATATATTCTTTAGTTGAAATGATAAAGCAGAGTTCTAGCTATTCTTCATTAGAAATTGAAGTTCTCACTTCTAAAGGTTATATGGAGAGAAATGCATTTCAAGAAGTTGATGAGTTTGGTATTCCTGATCCAGCCACTGCCTTGGGAAGCACTATTTCCATGTGGTTACTTTCTGTTATTGCTTCTTTCCATATAGAGAGCAAGCTCACAATTATGGAAGCTGGTGGACTTGAAGCTCTCTCTGACAAACTTACAAGACATACTTCAAATCCACAGGCAGAATATGAAGATACAGAAGGAATATGGATTAGTGCCTTGCTTGTAGCCATTCTATTTCAAGATACAAATGTTGTTCTATCTCCCATAACAATGCGCATTATACCTTCTATCACTCTTCTGCTAAGATCTGATGAAGTAATTGATAAATATTTTGCTGCCCAGGCTATGGCTAGTCTTGTTTGTAATGGTAATAAAGGAATAGATCTTGCCATTGCAAATTCTGGAGCTGTAGCTGGATTGATAACTATTATTGGGCATGTAGAGTCAAATATGCCAAATCTCATGGCTTTATCAGAAGAATTTTCTTTGGTACAAAGCCCTGATCAAGTTGTTTTGGATCACCTTTTTGAAATTGAAGATGTAAAAGTGGGGTCTACCGCCAGGAAATCTATACCCCTCTTAGTGGATCTCTTGAGACCAATACCAGAAAGGCCTAGTGCTCCACCAGTTGCTGTTAGACTCTTGATATCCATTGCCGATGGAAGTGATACCAATAAATTAATCCTGGCAGAAGCTGGAGCACTGGAAGCTTTGAACAAATACCTGTCCTTGAGTCCTCAAGACTCAACCGAGGCTGCTATATCCGAGTTATTGAGAATATTATTTAGCAATTCTGACCTTATTAAACATGAAGCATCGACAAATTCATTGAACCAACTCATAGCTGTTTTGCGTCTTGGATCAAGAAATGCTAGATATAGTGCAGCAAGAGCACTTAATGAGCTTTTTGATGCCGACAACATTAGAGATTCAGAGTTAGCTAAACAGGCCATTCAGCCGTTGGTTGACATGCTTAACACAACATCAGGGCATGAGCAGGAGGCTGCTCTCATGGCTTTGATCAAGTTAACTTCAGGAAATTCTTCAAAAGTATCTCTTATTACCGAGGTCGAAGGAAACCCACTTAAATGTTTATACAGAATACTGTCTTCTTCTTCATCCTTGGAACTGAAGTGCCATGCTGCACAACTCTGCTTTGCTCTTTTTGGCAATAGCAAGATCAGAGCAGATCCAGTTGCCTCAGAATGCCTAGAACCCCTTATATCACTGATGCAGTCTTGTTCCGAGACAGCAATAGAATCTGGGGTTTGTGCTTTTGAGAGGTTGCTGGAAGATGAACAACAGGTAGAGCTTGCAGCAGCCTACAATGTTGTGGATCTCCTTGTGAACTTGGTTTCTGGTACAAACTATCAACTTATTGAGGCTGCCATATCTGCTCTTATCAAACTTGGCAAAGACAGGACTCCAAGTAAATTAGACATGGTGAAAGCTGGCATTATTGATAATTGTCTCAAGCTACTCCAATTAGCACCTAGCTCTTTATGCTCTACAATAGCTGAGCTATTTCGCATTTTAACTAATAGTAGTGCAATTGCAAGAAGTTCAGATGCTGCAGAAATTGTAGAACCTCTTTTCCATGTTTTGCTACGTCGAGATTTCAACTTATGGGGACAGCATAGTGCCTTACAAGCTCTTGTAAATATATTGGAGAAACCACAAAGTCTTGCAACCTTGAAGCTTACTCCAAGCCAAGTTATTGAACCCTTGATTTCATTTCTAGAATCCCCATCCCAAGCTATTCAGCAGCTTGGCACAGAACTGTTATCTCATCTTCTTGCACAGGAACATTTTCAGCAAGATATTACAACAAAGAATGCAGTTGTGCCTCTCGTACAACTTGCAGGAATTGGAATATTAAACTTGCAGCAAACAGCTATAAAAGCATTGGAAAAAATTTCAACAAGTTGGCCAAAGGCAGTTGCTGATGCAGGAGGTATTTTTGAGCTTGCAAAAGTTATAATTCAAGAAGAGCCTCAGCCACCACATGCACTCTGGGAATCAGCTGCTTTAGTTCTTTCTAATGTATTACACTCCAATGCCGACTACTATTTTAAAGTTCCTGTGGTGGTTCTCGTAAAACTTTTGCACTCAACACTTGAGAGTACAATTAGCATAGCCCTTAATGCTTTAATAGTTCATGACAGAAGCGATGCTTCAAGCGCTGAGCAGATGATGGAAGCTGGAGTTATAGATGCTCTGTTGGACCTTTTAAGATCTCATCATTGTGAAGAAGCATCTGGTAGATTACTTGAAGCTTTATTTAACAATGTGAGAGTACGAGAGATGAAGGTATCTAAGTATGCTATAGCGCCTTTATCCCAGTATCTATTGGATCCACAAACCAGATCACAGTCTGGCAAGCTTCTTGCTGCTTTAGCTTTGGGAGATCTTTCCCAGCACGAAGGACATGCTAGAGCTAGTGCCTCTGTTTCTGCATGTCGTGCATTAATAAGCTTACTTGAAGATCAGCCAACAGAAGAAATGAAGGTGGTGGCTATATGTGCATTGCAAAACTTTGTCATGAACAGCAGGACCAACAGACGAGCTGTTGCAGAAGCTGGGGGCATACTGGTGATTCAGGAATTGCTGCTGTCTCCTAACACAGAAGTTGCTGCTCAAGCCGCTTTACTGATCAAATTTTTGTTTTCTACCCATACGCTGCAAGAATATGTGTCAAATGAGTTGATCAGGTCTTTGACAGCTGCACTGGAAAGAGAGTTATGGTCAACTGCCACAATCAATGAGGAGGTTTTGAAAACTCTGCATGTAATATTCTCGAACTTCCCTAAGCTCCACACATCTGAAGCAGCAACTCTTTGCATTCCTCATTTGGTAGGGGCACTTAAATCTGGTGGTGAAGCAGCTCAGGACTCTGTACTCGACACTTTTAGCTTGCTAAGACAATCTTGGTCAGCTATGCCAATAGATATAGCAAAGTCTCAAGCTATGATTGCTGCTGAAGCCATCCCCATTTTGCAAATGCTCATGAAAACCTGCCCGCCCAGTTTCCATGAAAGGGCAGATACTCTTCTACACTGCTTACCGGGTTGTTTGACTGTCACCATTAAGCGTGGAAACAACCTCAAACAAACTATGGGAAGCACCAATGCATTCTGCCGGTTGACAATAGGCAATGGTCCTCCAAAACAAACCAAGGTAGTGAATCATAGTACCTCTCCAGAATGGAAAGAAGGATTCACTTGGGCCTTTGATGTACCTCCAAAGGGCCAAAAGCTACACATCATATGCAAAAGCAAGAATACTTTTGGGAAGACAACCCTTGGGAGAGTCACTATCCAAATTGATAAAGTTGTGTCAGAGGGGGTTTATAGTGGATTATTCAGTCTCAATCATGATGGTAACAAAGACGGTTCTTCCCGAACACTTGAAATTGAGATTATATGGTCCAATAGGATTTCGAATGATGACATTTGA 6408 0.4159 MSKSPSHEQRQSIYSASQTWDFNEATGMDDAESTMAAVANFVEQLHANLSSPVEKESITARLLGIARKRKDARALIGSHAQAMPLFINILRNGTSLAKVNVASTLSVLCKDEELRLKVLLGGCIPPLLSLLNYESTDARKAAAEAIYEVSSGGLSDDHVGMKIFVTEGVVPTLWNQLNPKNKEDKIVEGFITGALRNLCGDKDGYWKATLEAGGVDIIVGLLSSDNAVSQSNAASLLARLMLAFSDSIPKVIDSGAVKALLQLVGWENDISVRASAADALEALSSKSTNAKKVIVNADGIPILIGAIVAPSKECMQGDGGQALQEHATRALANICGGMSALILYLGEISRSPHLDAPVGDIIGALAYTLMVFEEKVDDDEKHFDATQIEDILVTLLKPRDNKLIQERVLEAMASLYGNICLSKWLIQADSKKVLIGLITMAATDVQEYLILSLTSLCCDKIGVWEAIKRREGIQLLISLLGLSSEQHQEYSVQLLAILTDHVDDSKWAITAAGGIPPLVQLLETGSQKAREEAANVLWSLCCHSEDIRACVESAGAIPAFLWLLKSGGPKGQEASAMALTKLVRVADSATINQLLALLLGDSPSLKAHIIRVLGHVLTMASQNDLLEKGSAANKGLRSLVQVLNSSNEETQEYAASVLADLFITRQDICDSLATDEIVLPCMKLLTSKTQVVATQSARALSALSRPTKNKAANKMSYIVEGDVEPLIKLAKTSSVEAAETAVAALANLLFDPFIAAEALAEDVVSALTRVLAEGTLEGKQNASRALHQLLKHFPVGDVLKGYAQCRFTVLALVDSLRAMDMDGTDAADALEVIALLARTKQSVNFTYPPWSALAEIPSSLEHLVYCLAEGPSLVQDKAIKILSRLCGDQPVVLGDLLSSSSRSIGSLADRIMNSSSLEVKIGGAALLICAAKEKKELSMDSLDASGYLKPLIYSLVEMIKQSSSYSSLEIEVLTSKGYMERNAFQEVDEFGIPDPATALGSTISMWLLSVIASFHIESKLTIMEAGGLEALSDKLTRHTSNPQAEYEDTEGIWISALLVAILFQDTNVVLSPITMRIIPSITLLLRSDEVIDKYFAAQAMASLVCNGNKGIDLAIANSGAVAGLITIIGHVESNMPNLMALSEEFSLVQSPDQVVLDHLFEIEDVKVGSTARKSIPLLVDLLRPIPERPSAPPVAVRLLISIADGSDTNKLILAEAGALEALNKYLSLSPQDSTEAAISELLRILFSNSDLIKHEASTNSLNQLIAVLRLGSRNARYSAARALNELFDADNIRDSELAKQAIQPLVDMLNTTSGHEQEAALMALIKLTSGNSSKVSLITEVEGNPLKCLYRILSSSSSLELKCHAAQLCFALFGNSKIRADPVASECLEPLISLMQSCSETAIESGVCAFERLLEDEQQVELAAAYNVVDLLVNLVSGTNYQLIEAAISALIKLGKDRTPSKLDMVKAGIIDNCLKLLQLAPSSLCSTIAELFRILTNSSAIARSSDAAEIVEPLFHVLLRRDFNLWGQHSALQALVNILEKPQSLATLKLTPSQVIEPLISFLESPSQAIQQLGTELLSHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAIKALEKISTSWPKAVADAGGIFELAKVIIQEEPQPPHALWESAALVLSNVLHSNADYYFKVPVVVLVKLLHSTLESTISIALNALIVHDRSDASSAEQMMEAGVIDALLDLLRSHHCEEASGRLLEALFNNVRVREMKVSKYAIAPLSQYLLDPQTRSQSGKLLAALALGDLSQHEGHARASASVSACRALISLLEDQPTEEMKVVAICALQNFVMNSRTNRRAVAEAGGILVIQELLLSPNTEVAAQAALLIKFLFSTHTLQEYVSNELIRSLTAALERELWSTATINEEVLKTLHVIFSNFPKLHTSEAATLCIPHLVGALKSGGEAAQDSVLDTFSLLRQSWSAMPIDIAKSQAMIAAEAIPILQMLMKTCPPSFHERADTLLHCLPGCLTVTIKRGNNLKQTMGSTNAFCRLTIGNGPPKQTKVVNHSTSPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGKTTLGRVTIQIDKVVSEGVYSGLFSLNHDGNKDGSSRTLEIEIIWSNRISNDDI 2135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00938 2135 SMART arm_5 1458 1498 IPR000225 GO:0005515
Cca05g00938 2135 SMART arm_5 111 151 IPR000225 GO:0005515
Cca05g00938 2135 SMART arm_5 1708 1749 IPR000225 GO:0005515
Cca05g00938 2135 SMART arm_5 1834 1874 IPR000225 GO:0005515
Cca05g00938 2135 SMART arm_5 1288 1329 IPR000225 GO:0005515
Cca05g00938 2135 SMART arm_5 1791 1832 IPR000225 GO:0005515
Cca05g00938 2135 SMART arm_5 1416 1456 IPR000225 GO:0005515
Cca05g00938 2135 SMART arm_5 156 200 IPR000225 GO:0005515
Cca05g00938 2135 SMART arm_5 244 285 IPR000225 GO:0005515
Cca05g00938 2135 SMART arm_5 623 663 IPR000225 GO:0005515
Cca05g00938 2135 SMART arm_5 501 542 IPR000225 GO:0005515
Cca05g00938 2135 SMART arm_5 201 242 IPR000225 GO:0005515
Cca05g00938 2135 SMART arm_5 287 336 IPR000225 GO:0005515
Cca05g00938 2135 SMART arm_5 1206 1246 IPR000225 GO:0005515
Cca05g00938 2135 SMART arm_5 665 705 IPR000225 GO:0005515
Cca05g00938 2135 SMART arm_5 459 500 IPR000225 GO:0005515
Cca05g00938 2135 SMART arm_5 544 584 IPR000225 GO:0005515
Cca05g00938 2135 SMART arm_5 1375 1415 IPR000225 GO:0005515
Cca05g00938 2135 SMART arm_5 1543 1584 IPR000225 GO:0005515
Cca05g00938 2135 SMART arm_5 751 791 IPR000225 GO:0005515
Cca05g00938 2135 SMART arm_5 710 750 IPR000225 GO:0005515
Cca05g00938 2135 SMART C2_3c 2008 2104 IPR000008 -
Cca05g00938 2135 Pfam Armadillo/beta-catenin-like repeat 506 541 IPR000225 GO:0005515
Cca05g00938 2135 PANTHER - 13 2133 - -
Cca05g00938 2135 Gene3D C2 domain 2007 2133 IPR035892 -
Cca05g00938 2135 ProSiteProfiles C2 domain profile. 1988 2105 IPR000008 -
Cca05g00938 2135 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2006 2112 IPR035892 -
Cca05g00938 2135 CDD C2 2009 2099 - -
Cca05g00938 2135 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 255 299 IPR000225 GO:0005515
Cca05g00938 2135 Gene3D - 858 1162 IPR011989 -
Cca05g00938 2135 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 13 2133 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Cca05g00938 2135 Gene3D - 1589 1796 IPR011989 -
Cca05g00938 2135 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 513 555 IPR000225 GO:0005515
Cca05g00938 2135 SUPERFAMILY ARM repeat 385 1121 IPR016024 -
Cca05g00938 2135 SUPERFAMILY ARM repeat 1176 1567 IPR016024 -
Cca05g00938 2135 Pfam C2 domain 2008 2107 IPR000008 -
Cca05g00938 2135 Gene3D - 1797 2005 IPR011989 -
Cca05g00938 2135 Gene3D - 1345 1588 IPR011989 -
Cca05g00938 2135 Gene3D - 1163 1344 IPR011989 -
Cca05g00938 2135 Gene3D - 364 625 IPR011989 -
Cca05g00938 2135 Gene3D - 626 836 IPR011989 -
Cca05g00938 2135 SUPERFAMILY ARM repeat 72 309 IPR016024 -
Cca05g00938 2135 SUPERFAMILY ARM repeat 1557 1999 IPR016024 -
Cca05g00938 2135 Gene3D - 4 353 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00938 Cca-Chr5 25090647 25101266 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00938 432 714 U-box Gene Family AT2G23140 27.586 2.76e-11 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00938 - - gmx:100796864 3821.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00938 05 25090647 25101266 Cca05g00938 05 25090647 25101266 ECH