Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00937 ATGCGAATGAAACCCTACGAAAAACAAAGCGGTAGGTCCGGACCGACAGACACGGCGCCAGAGTCCAAAAGCAATGTCGTAAGCAGTGACTATACCGCTTCGTGTGGGTTCTGGACACGCACGCACCGCACTTTCAATTCCCACACGTGTCCATCCTCGTCACCCAAACCCTACCCTATAAAACCCCCTCTCTCCCTCACGCTCCAACTTTCAAACGCCGCCACTCACACAACAATGGCCGCAACCGCACCGCACCTCCACTTCCCCCCCGGTTTCCGCTTCCACCCCACCGACGAAGAACTCGTCGTCCACTACCTCTGCCCAAAATGCGCTTCCCACCAAATCGCCGTTCCCATCATCGCCGAAATCGACCTCTATAAATACGACCCGTGGGACCTTCCAGGACTGGCCTTGTACGGAGAGAAAGAGTGGTACTTTTTCTCGCCCAGGGAACGCAAGTACCCAAACGGCTCGCGCCCAAACCGGTCCGCGGGAACCGGATACTGGAAGGCAACCGGAGCGGATAAACCCATTGGTAAACCCAAACCGGTTGGAATCAAGAAAGCTCTGGTCTTTTACGCTGGAAAAGCTCCCAAGGGAGAGAAAACCAATTGGATCATGCACGAGTATCGTCTCGCTGACGTGGATCGTTCCGCTCGCAAAAAAAACACCTTGAGGCTGGATGACTGGGTGCTGTGTCGAATCTACAACAAGAAAGGCTCCATCGAGAAGCAACCACCGAGTGTGACGCGCAAAATGGAATGTTCCGAAATGGAGGAGAAGCCTGGGATTGCGACACGTGGCGGCGCGGCGGCGGATAGCGTGCACTTCGAGGCTTCGGACTCGGTGCCGCGGCTGCACACGGCGGACTCGAGCTGCTCCGAGCACGCGGTGTCGCCGGAGTTCGCGAGCGAGGTGCAGAGCGAGCCGAAGAGGGGAAACGAGTTTGCGTTTAATTACGTGGACGCCACGCTCGGGTCGCAGTTCCAGAGCGGGGATCAGATGCTGCCGCTGCAGGATATCTTCATGTACCTCTCCAAGCCTTTCTGA 1050 0.5686 MRMKPYEKQSGRSGPTDTAPESKSNVVSSDYTASCGFWTRTHRTFNSHTCPSSSPKPYPIKPPLSLTLQLSNAATHTTMAATAPHLHFPPGFRFHPTDEELVVHYLCPKCASHQIAVPIIAEIDLYKYDPWDLPGLALYGEKEWYFFSPRERKYPNGSRPNRSAGTGYWKATGADKPIGKPKPVGIKKALVFYAGKAPKGEKTNWIMHEYRLADVDRSARKKNTLRLDDWVLCRIYNKKGSIEKQPPSVTRKMECSEMEEKPGIATRGGAAADSVHFEASDSVPRLHTADSSCSEHAVSPEFASEVQSEPKRGNEFAFNYVDATLGSQFQSGDQMLPLQDIFMYLSKPF 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00937 349 SUPERFAMILY NAC domain 76 238 IPR036093 GO:0003677|GO:0006355
Cca05g00937 349 PANTHER NAC TRANSCRIPTION FACTOR 56 83 333 - -
Cca05g00937 349 MobiDBLite consensus disorder prediction 1 26 - -
Cca05g00937 349 Pfam No apical meristem (NAM) protein 89 212 IPR003441 GO:0003677|GO:0006355
Cca05g00937 349 ProSiteProfiles NAC domain profile. 88 238 IPR003441 GO:0003677|GO:0006355
Cca05g00937 349 MobiDBLite consensus disorder prediction 11 26 - -
Cca05g00937 349 Gene3D NAC domain 97 242 IPR036093 GO:0003677|GO:0006355
Cca05g00937 349 PANTHER NAC DOMAIN-CONTAINING PROTEIN 2-LIKE 83 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00937 Cca-Chr5 25070702 25072630 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00937 86 349 NAC Transcription Factor Family AT1G01720 70.035 6.45e-142 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca05g00937 NAM 3.3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00937 - - gmx:100170714 444.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00937 05 25070702 25072630 Cca05g00937 05 25070702 25072630 ECH
Cca03g00236 03 3470127 3475133 Cca05g00937 05 25070702 25072630 PCT