Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00936 ATGGAACGTGAAGAAGGCAAACAACCCCCCCAGAAAACCCCTATACACAATCAAAATGAGCAAGTTAATGATGATAATTTTGTTCTAGAAAACGGCTTGCAAGAGCAAAGTGGCACATTCACAACGTTTGCAACATTTGAAAGTGAAAGTGAGAGTGAGTCATCTTTTGGTGACAATTATGATGATGAGGATGCTGAATTTTTCCTGAGCCAAGAGTTTGAAGCAGATCTTCAATTTCTGGAGAGTGAAGGAAGCAatgatgattatgatgatgaaggaatggaagaagaagatgagattgatgtggatgaattgacttatgaagagttgatTGAGTTGGGAGATTTTATAGGGCAAGAGAAAAGAGGGTTATCAGCAAATGAAATTTCTTCATGCTTGCATTCTCACACTTTCCATTCTTCTCAAAACAAGAGTGGAATTGATCGATGTGTGATTTGTCAAGTTGAATATGAAGAAGGTGAATCTTTGGTGGCAATTCAGTGTGAGCACCCTTATCATACAGATTGCATAACCAAGTGGCTTCAAATTAAGAAGGTTTGCCCTATATGTAATACTGAAATTTCTGCTCCCAAGATGGTTAGTTAG 606 0.3383 MEREEGKQPPQKTPIHNQNEQVNDDNFVLENGLQEQSGTFTTFATFESESESESSFGDNYDDEDAEFFLSQEFEADLQFLESEGSNDDYDDEGMEEEDEIDVDELTYEELIELGDFIGQEKRGLSANEISSCLHSHTFHSSQNKSGIDRCVICQVEYEEGESLVAIQCEHPYHTDCITKWLQIKKVCPICNTEISAPKMVS 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00936 201 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 198 IPR045191 GO:0061630
Cca05g00936 201 Pfam Ring finger domain 149 191 IPR001841 -
Cca05g00936 201 ProSiteProfiles Zinc finger RING-type profile. 150 191 IPR001841 -
Cca05g00936 201 MobiDBLite consensus disorder prediction 1 26 - -
Cca05g00936 201 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED-LIKE 1 198 - -
Cca05g00936 201 MobiDBLite consensus disorder prediction 11 26 - -
Cca05g00936 201 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 197 IPR013083 -
Cca05g00936 201 SUPERFAMILY RING/U-box 149 197 - -
Cca05g00936 201 SMART ring_2 150 190 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00936 Cca-Chr5 25059038 25059669 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00936 88 194 C3H Transcription Factor Family AT3G63530 46.364 1.12e-28 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00936 K19045 - gmx:100777284 322.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00936 05 25059038 25059669 Cca05g00936 05 25059038 25059669 ECH
Cca03g01125 03 27266904 27269122 Cca05g00936 05 25059038 25059669 PCT