Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00928 ATGTCGACGCAGAATCGTCGTTCGTCGTTTTGTTCCTCAACGGCGTCGTCTTTGGCGAAACGACAGCCGTCAGTGCCGTCGGGAAAGACTCAGCCTGCGGCGAAGAGAGCGCCTCTTGCTAACCTCACCAATCAGAAGAATGCTTCGGTGTCAAGTGCAACAAAAATTGCCAAGACCAAGAAAGAGGCTCCTTCAAAAACCAATATCACAAGATCAACAATTTGTGGTAACAAATTACCCAAGTTAAAAACTATTAACTCAAGCACAGTTGTTATTCCAAAGGCTAATTCTTTACCACAAAGGAAGGATGCTGCTGCTCACACAGTCTCAGTGCCCCTTCGGAGCAGCATCGATGTTTCTCCTAGTAAATCAGATGGAAGGTCCGTTTCCATGGATGAGACAGTGTCTTCTTGTGATTCTATCAATAGTCCTGAAGTTGAATATCTGGACAACAAGGATGTTTTTGCTGCTGATTCAATTCAGAGAAAGATAATAAGTAGTTTGAACGTTTCTGATACTACAGAGCCAGAGGGTGGTAAAATATGTAGTAGGGAAATAATTGTTGGGTCAGAAAGAGAGGACAAGATTGTCAATATCGACAATGTTTACTCTGATCCGCAGCTTTGTGAAGCCTATGTTTGTGACATCTACAAGCACCTACGTGAATCAGAGGAAAAGAAAAGGCCTTCCACAGACTTCATGGAGAGAATTCAGAAGGACATAAATGTTAGCATGCGCGCTATATTGATTGACTGGCTTGTTGAGGTGGCTGAGGAGTATCGACTTGTACCTGATACATTGTATTTGACAGTGAACTACATAGATCGGTATCTTTCAGGGAATGCTATGAATAGCCAAAGGTTACAGTTACTCGGTGTTTCCTGCATGATGATTGCCTCTAAATATGAAGAGATTTGTGCACCTCAGGTGGAAGAATTTTGTTATATAACAGATAATACGTACTTAAAAGAAGAGGTTTTGCAAATGGAATCTACTATCCTGAATTATCTTAAGTTCGAATTGACAGCCCCAACAATTAAATGTTTCTCAAGACGATTTGTTCGTGCAGCTGCTCAAGATGTCCAGGAGCTGCCTTCCCTTCAACTAGAGTGCTTAACCAATTATATTGCCGAATTATCCCTCTTGGAGTACACTATGCTCTCTTATCCTCCATCACTGATAGCTGCTTCTGCAATTTTCCTTGCCAAGTTTATACTTGCCCCTTCAAAGAGACCATGGAATTCAACATTGCAGCATTACACGCTCTATCGGCCTTCTGATTTGTGTGCATGTGTAAAAGATCTCCATCGTCTGTGTTGCAGCAACCATGATTCTAATTTACCTGCAATCCGAGAGAAATACAGTCAGCACAAGTACAAATGCGTGGCCAAGAAGCACATTCCTACTTCAATACCTCAAGAATTTTTTCAGAAGTGA 1437 0.4182 MSTQNRRSSFCSSTASSLAKRQPSVPSGKTQPAAKRAPLANLTNQKNASVSSATKIAKTKKEAPSKTNITRSTICGNKLPKLKTINSSTVVIPKANSLPQRKDAAAHTVSVPLRSSIDVSPSKSDGRSVSMDETVSSCDSINSPEVEYLDNKDVFAADSIQRKIISSLNVSDTTEPEGGKICSREIIVGSEREDKIVNIDNVYSDPQLCEAYVCDIYKHLRESEEKKRPSTDFMERIQKDINVSMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNAMNSQRLQLLGVSCMMIASKYEEICAPQVEEFCYITDNTYLKEEVLQMESTILNYLKFELTAPTIKCFSRRFVRAAAQDVQELPSLQLECLTNYIAELSLLEYTMLSYPPSLIAASAIFLAKFILAPSKRPWNSTLQHYTLYRPSDLCACVKDLHRLCCSNHDSNLPAIREKYSQHKYKCVAKKHIPTSIPQEFFQK 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00928 478 MobiDBLite consensus disorder prediction 1 72 - -
Cca05g00928 478 ProSitePatterns Cyclins signature. 246 277 IPR006671 -
Cca05g00928 478 SUPERFAMILY Cyclin-like 344 470 IPR036915 -
Cca05g00928 478 SMART Cyclin_C_2 344 468 IPR004367 -
Cca05g00928 478 SMART cyclin_7 352 437 IPR013763 -
Cca05g00928 478 SMART cyclin_7 251 335 IPR013763 -
Cca05g00928 478 SUPERFAMILY Cyclin-like 204 341 IPR036915 -
Cca05g00928 478 MobiDBLite consensus disorder prediction 116 138 - -
Cca05g00928 478 CDD CYCLIN 342 436 IPR013763 -
Cca05g00928 478 Gene3D - 229 342 - -
Cca05g00928 478 PANTHER CYCLIN-A1-1 28 477 - -
Cca05g00928 478 Pfam Cyclin, C-terminal domain 344 464 IPR004367 -
Cca05g00928 478 Pfam Cyclin, N-terminal domain 215 341 IPR006671 -
Cca05g00928 478 PANTHER CYCLINS 28 477 IPR039361 -
Cca05g00928 478 CDD CYCLIN 245 334 IPR013763 -
Cca05g00928 478 MobiDBLite consensus disorder prediction 37 58 - -
Cca05g00928 478 PIRSF Cyclin_A_B_D_E 1 475 IPR039361 -
Cca05g00928 478 Gene3D - 215 464 - -
Cca05g00928 478 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00928 Cca-Chr5 24923474 24929076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00928 4 476 Core Cell Cycle Gene Families AT1G44110 61.667 0.0 542
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00928 K06627 - gmx:100776207 742.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00928 05 24923474 24929076 Cca05g00928 05 24923474 24929076 ECH
Cca05g00928 05 24923474 24929076 Cca03g01845 03 37791725 37794054 PCT