Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00926 ATGCATAACCAAGTAATGCTATTGctccttctacttcttcttcttcttcttccttcACTCATGTCTCTCTTCACCAATGCTTCATCTTCCTCATGCCCCATGGATCTCGCCTACGTTGAAACCATTCCCTGGAACTCTTCACTCTGCAGAAACCCAGTAATTAACAACGACTCATGTTGCTCAACACTGCTCAGCGTCTTCGCCATTGCCCTCGCACAGCGCCTCAAAGAAACCTCCATTTTTTACCTTCCAGACGAAGACACTTCCTCCGCTTGCTTATTTGACTTCAAACTCAGGCTTCAAGCCTTGTCAATACCACAAACCATGGTTAGTCTTTGTTTCCCTGACCCAACACGTTTTGTTTACAACTCTTCAGCTTGTGCTGCTATCAAAACCACGCTAGATTGGAGGCAAAAGGTGGGCACGGTTACCTCATTGGACACATCTTGCAATGGTGATCTCAAAAGCAAAACTCGTTGCAGCGTGTGCTCTCATGCTGCCCACAACGTTACTTCCATGCTCAAGAGTATTGACCCAAAGGCTAATGGCAGAAAGTGTTTCTACTACGTAGTGTTGTATGCTGCTGGTGTTGTTAACCCGTTTGGCACAACGGATGTAAGCACCATGTGTTGCATATTAAGCCTGCCTCAACCGTCTAGTGGAGTGGCAAAAGGGTCATCAAGTAAGAGAGGAAAGGTGATGAAGCttgtttttttgtttttgggtgttggtgttggtgttgtgcttgcttttgtAATGATAGTTGTTTATAGGAAGTGGGGTAAGAGGAGGAGGGAGAGTGTTTATCATAGGGAAGTTGAGAACAAGGTTAGGGCTAGTGTTTTGCCTAACACTGGTGCTAGATGGTTTCATGTGTCGGAGCTAGAGCGTGCTACTAGCAAATTCTCGCGGAGGAATGTGATTGGTCAAGGTGGTGATGGGGTTGTGTACAAAGGGACTCTTTTGGATGGCACTGTGGTTGCAGTTAAGGAGATTTTTGATTTGGAAACTAAAGGGGATGAAGATTTCTGCTATGAGGTGGAGATCATAAGCAAAATAAAGCACAGGAATCTTCTTTCTCTTAGGGGGGGTTGTGTTACAAGTGGTAATTTGAAAGGTAAGAGGAGGTTTCTGGTTTATGATTTCATGCCTAATGGAAGCATCAGTGATCAATTGTCACTTGTTGGGGTTAATAGGTTAACATGGCCACAAAGGAAGAATATAATCCTTGATGTGGCTAAGGGGCTTGCTTATTTGCACTATGAAATCAAACCTCCAATTTATCATCGTGATATCAAAGCTACCAACATACTTTTGGATTCCAAAATGAAAGCTAAATTGGCTGATTTTGGGTTGGCCAAACAAGGTAGTGAGGACCAATCTCATCTCACTACAAGGGTTGCTGGCACGTATGGTTATGTTGCACCCGAGTATGCTCTTTATGGTCAACTAACTGAGAAAAGTGATGTGTACAGTTTCGGCATTGTGATTCTTGAAATCATGAGTGGAAGAAAAGTGATTGATGCTTTGAATTCATCGACGGATTCAATCACGGATTGGGTATGGACACTTGTGGAATGTGGAAGGGTGGGGGAGATTTTTGATGAATCAATAAGAGAAGGGCCAGAAAAAGTTATGGAAAGGTTTGTTCATGTTGGAATGCTTTGTGCTCATGCTGTGGTGGCGTTAAGGCCAACTATTGCTGAGGCACTTAAGATGTTAGAGGGTGGCATTGACATTTCCGAATTACCTGAGAGGCCAGTGCCACTTGGTCATGCGTCCTTTCAATCTTCTCTGTTGCATGGTTTGCAGATAAATGGTTGA 1824 0.4194 MHNQVMLLLLLLLLLLLPSLMSLFTNASSSSCPMDLAYVETIPWNSSLCRNPVINNDSCCSTLLSVFAIALAQRLKETSIFYLPDEDTSSACLFDFKLRLQALSIPQTMVSLCFPDPTRFVYNSSACAAIKTTLDWRQKVGTVTSLDTSCNGDLKSKTRCSVCSHAAHNVTSMLKSIDPKANGRKCFYYVVLYAAGVVNPFGTTDVSTMCCILSLPQPSSGVAKGSSSKRGKVMKLVFLFLGVGVGVVLAFVMIVVYRKWGKRRRESVYHREVENKVRASVLPNTGARWFHVSELERATSKFSRRNVIGQGGDGVVYKGTLLDGTVVAVKEIFDLETKGDEDFCYEVEIISKIKHRNLLSLRGGCVTSGNLKGKRRFLVYDFMPNGSISDQLSLVGVNRLTWPQRKNIILDVAKGLAYLHYEIKPPIYHRDIKATNILLDSKMKAKLADFGLAKQGSEDQSHLTTRVAGTYGYVAPEYALYGQLTEKSDVYSFGIVILEIMSGRKVIDALNSSTDSITDWVWTLVECGRVGEIFDESIREGPEKVMERFVHVGMLCAHAVVALRPTIAEALKMLEGGIDISELPERPVPLGHASFQSSLLHGLQING 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00926 607 SUPERFAMILY Protein kinase-like (PK-like) 282 574 IPR011009 -
Cca05g00926 607 PANTHER OS01G0253100 PROTEIN 25 601 IPR045271 GO:0004714|GO:0006468
Cca05g00926 607 CDD STKc_IRAK 308 576 - -
Cca05g00926 607 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 25 601 - -
Cca05g00926 607 Pfam SPARK 27 186 IPR043891 -
Cca05g00926 607 Gene3D Phosphorylase Kinase; domain 1 263 382 - -
Cca05g00926 607 ProSitePatterns Serine/Threonine protein kinases active-site signature. 427 439 IPR008271 GO:0004672|GO:0006468
Cca05g00926 607 Pfam Protein kinase domain 304 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00926 607 Gene3D Transferase(Phosphotransferase) domain 1 383 582 - -
Cca05g00926 607 SMART serkin_6 302 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00926 607 ProSiteProfiles Protein kinase domain profile. 302 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00926 Cca-Chr5 24829714 24831554 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00926 26 606 Receptor kinase-like Gene Family AT1G11050 48.185 0.0 539
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Cca05g00926 Pkinase 5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00926 - - gmx:100800481 893.649