Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00923 ATGATCCTTCCCTTACTCATGTCACTCTTGACTATTTGCATAGCTGGTGCTGCACCTTTCTCATGCCCCATGGATCTCAGCTACGTTGAGACCATTCCATGGAACACTTCAATCTGCAGAGACGCAATAGACAGCCAACCTTGCTGCCAAACTCTGTTCAGCATCTTCGGCATAGCCCTTGCTCAACGCCTCAAAGAAACTTCCTTTTTCTACCTTCCTAATCAAAACACTTCCTCCACTTGCTTACATGATTTCAAACTCAAGCTTGAAGCCTTGTCAATTCCACCAAAGATGCTCCTATTTTGCTTCCCTGACCCAACACTCTTCGTTACTAACTCTTCATTTTGTGCTGGCATTAGAACCACGCAAGATTGGAGGCAAAGGGTGGGCATGGTTACCCCATTAGACACATCTTGCAATGGTGACCTCAAGGACCAAACTCGCTGCAGTGTTGCTAATCCGTTTGGCACAACAGATTTAAGCACTACAAGTTGCATACTAGGCCTGCCGCAACCTTCTAGTGGAATCACAAAAGGGTCATCAAATAAGAGAGCAAAAGTGATGAAGCTCGTTTTTTCTTTATTGGGTGCTGTTGTTGGGGTTGTGATTGCTTTTGTGCTGATGGTCATGTACAGGAAGTGGGATAAGAGAAAGAAGGAAAAAGTTCATCATCATAGACAAGTTGAAAACGAGGCCAGGGCCAGTGTTTTGCTTTTGTCTAACACAGATGCTAAATGGTTTGACATATCAGAGCTTCAACGTGCCACGGATAAATTTTCACAGGACAATATGGTTGGTCGAGGTGGTGATGGAGTTGTGTACAAAGGGACTCTTTCAGATGGCACTGTGGTTGCAATTAAGGAGATTTTTGATTTGGAAACTAAAGGGGATGAAGAGTTCTGCTATGAAGTGGAGATCATAAGCAAAATAAAGCACAGGAATCTTCTTTCTCTTAGGGGTTGTTGTGTTACAAGTGATAATTTGAAAGGTAAGAGGAGGTTTCTGGTTCATGATTTCATGCCTAATGGAAGCCTTTGTTACCAATTGTCACTTGGTGGGGCTAATAGGCTAACATGGCTACAAAGGAAGAACATAATCCTTGATGTGGCTAAGGGGCTTGCTTATTTGCACTATGAAATCAAACCTCCAATTTATCACCGTGACATTAAGGCTACCAACATACTTTTGGATTCCAAAATGAATGCTAAATTGGCTGATTTTAGCTTGGCCAAGCAAGGTTATGAAGGCCAGTCTCATCTCACCACAAGGGTTGCTGGCACATATGGTTATTTGGCACCAGAGTATGCTTTATATGGGCAACTAACTGAGAAAAGTGATGTATACAGTTTTGGTATTGTGATTCTTGAGACAATGAGTGGAAGAAAAGTGGTTGACACTTTAAATTCATCTGAGGATTCAATTACGGATTGGGTATGGACGCTTATGGAATCTGGAAAGATGAAGGAAATATTTGACGAGTCAATAAGAGAAGGGCCAGAGAAAATGATGGAAAGGTTTGTTCATGTTGGAATGTTATGTGCTCATGCGGTGGTGGCCTTAAGGCCAACTATTACTGAGGCTCTTAAGATGTTAGAGGGTGACATTGACATTCCCAAATTACCTGATAGGCCAGTACCACTTACTCATTCATCCTTTCAATATTCTCTGTTGCATGGTATGCAAAGAAGTGGTTAA 1695 0.4212 MILPLLMSLLTICIAGAAPFSCPMDLSYVETIPWNTSICRDAIDSQPCCQTLFSIFGIALAQRLKETSFFYLPNQNTSSTCLHDFKLKLEALSIPPKMLLFCFPDPTLFVTNSSFCAGIRTTQDWRQRVGMVTPLDTSCNGDLKDQTRCSVANPFGTTDLSTTSCILGLPQPSSGITKGSSNKRAKVMKLVFSLLGAVVGVVIAFVLMVMYRKWDKRKKEKVHHHRQVENEARASVLLLSNTDAKWFDISELQRATDKFSQDNMVGRGGDGVVYKGTLSDGTVVAIKEIFDLETKGDEEFCYEVEIISKIKHRNLLSLRGCCVTSDNLKGKRRFLVHDFMPNGSLCYQLSLGGANRLTWLQRKNIILDVAKGLAYLHYEIKPPIYHRDIKATNILLDSKMNAKLADFSLAKQGYEGQSHLTTRVAGTYGYLAPEYALYGQLTEKSDVYSFGIVILETMSGRKVVDTLNSSEDSITDWVWTLMESGKMKEIFDESIREGPEKMMERFVHVGMLCAHAVVALRPTITEALKMLEGDIDIPKLPDRPVPLTHSSFQYSLLHGMQRSG 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00923 564 SMART serkin_6 259 531 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00923 564 Gene3D Phosphorylase Kinase; domain 1 217 339 - -
Cca05g00923 564 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 163 558 - -
Cca05g00923 564 PANTHER OS01G0253100 PROTEIN 163 558 IPR045271 GO:0004714|GO:0006468
Cca05g00923 564 Pfam Protein kinase domain 260 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00923 564 CDD STKc_IRAK 265 533 - -
Cca05g00923 564 ProSitePatterns Serine/Threonine protein kinases active-site signature. 384 396 IPR008271 GO:0004672|GO:0006468
Cca05g00923 564 PANTHER OS01G0253100 PROTEIN 13 151 IPR045271 GO:0004714|GO:0006468
Cca05g00923 564 Gene3D Transferase(Phosphotransferase) domain 1 340 537 - -
Cca05g00923 564 SUPERFAMILY Protein kinase-like (PK-like) 238 532 IPR011009 -
Cca05g00923 564 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 13 151 - -
Cca05g00923 564 Pfam SPARK 20 150 IPR043891 -
Cca05g00923 564 ProSiteProfiles Protein kinase domain profile. 259 518 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00923 Cca-Chr5 24817366 24819165 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00923 11 553 Receptor kinase-like Gene Family AT1G11050 47.404 2.31e-176 510
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Cca05g00923 Pkinase 3.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00923 - - ccaj:109788171 830.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00923 05 24817366 24819165 Cca05g00923 05 24817366 24819165 ECH