Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00922 ATGGAAAAAACCCATGTCACGTTCTTCTTCCTTCCCCTTCTCATCACATCCCTCTTCACCATTGCATCTTCTTCCTCATGCCCCATAAACTTCTCCTACGTCCAAACCCTCCCTTGGGACACTTCAACATGCAGAAACCCTATCCACGATCAACAACACTGTTGCCAAACCCTTACCACCCTCTTCCACGTAGGCCTCGCCCAACACCTCAAACAAACCTCCTTCTTTCAACTCCCCAATCAAAGCACTTCCTCCACTTGCTTGTCCAATTTCCAAGCCAACCTCACACCCTTGTCGATAAACTCATCTTTGGTCCCTTCTTGCTTCCCCAACCCTTCCATGTTTGTCACCAACATGTCCACGTGTGCAGGCATTGTAACTACCCAAGATTGGGAACAAAAGGTGGGTTCGGTTAGGGTTGGCCCATTACGGAGTTTTTGTAGTGGGGAACTTAGTGATCAAACTCGCTGTCACAATTGCGTTGCAGCGGGGTTAAAAGTGGCTTTTCAGCTTACTAGTGTTGACCCTAATGCTAGTGATGTAAATCAATGTTTTTCCTTTGCATCGCTATATGCTGCAGCGGTTGTTAATCCTCAAGGTACAACTGATGACACCACGATGGGATGCATATTAAACATACCATTGACAAAAGGGTCATCGAAGAATAGAGGGAAGGTTGTGAAGGTGGTTTTTACGGTGTTGGGGTGTGTGATCATTGCTTTTGTGGTGATGGTGATCATATACAGGAAGTGGGATAAGAGAAGGAAGGAGAATGTTTATCACAGGGAAATTGAAAACGGCGTCAGGAATAGTGTTTTGTCTAACACTGGTGCAAAATGGTTTCATGTATCTGAGCTTGAACGTGCCACTGATAGGTTTTCGCGGAGGAGTGTGGTTGGTCAAGGTGGTGACGGGGTTGTGTACAAAGGGAAACTCTCGGATGGTACTTTGGTTGCTATCAAGGAGAATTTTGATTTGGAGAATAAAGGGGATGAGGAGTTTTGCTATGAGGTGGAGATCATAAGCAAGATAAGGCACAGGAATCTTCTTGCTCTTCGTGGTTGTTGCATTTCAAGTGATAATATGAAAGGTAAGAGGAGGTTTCTGGTTTATGATTTCATGCCTAATGGAAGCCTTTGTTACCAACTGTCACTAGGTGGGGCTAATAGGCTAACATGGCCACAAAGGAAGAACATAATCCTTGATGTGGCTAAGGGGCTTGCTTATTTGCACTATGAGATCAAACCGCCAATTTATCATCGTGATATTAAGGCCACCAACATACTTTTGGATTCCAAAATGAGTGCTAAATTGGCTGATTTTGGGTTGGCAAGGGAAGGTAGTGAGGACCAGTCTCATTTCACCACAAGGGTTGCTGGCACATATGGTTATGTTGCACCCGAGTATGCTTTATATGGTCAACTAACAGATAAAAGTGATGTGTATAGTTTTGGTATTGTGATTCTTGAAATCATGAGTGGGAGAAAAGTGCTTGACAGTTTGAATTCATCTGCGGATGCAATCACGGATTGGGTGTGGACGCTTGTGGAATCAGGAAAGGTGGAAGATGTTTTTGATGAATCAATAAGAGAAGGGCCAGAGAAAATGATGGAAAGGTTTGTTCATGTTGGAATGCTATGTGCTCATGCGGTAATGGCTTTAAGGCCAAGTATTGCTGAGGCACTTAAGATGTTAGAGGGTGACACTGAGATTCCCAAATTACCAGATAGGCCAGTGCCTTTGGGTCATGCGTCCTTTCAATCTTCTCTGTTGCATGGTTTGCAAAGAAGTGGAAGATCTATGGCATGTTGA 1812 0.4415 MEKTHVTFFFLPLLITSLFTIASSSSCPINFSYVQTLPWDTSTCRNPIHDQQHCCQTLTTLFHVGLAQHLKQTSFFQLPNQSTSSTCLSNFQANLTPLSINSSLVPSCFPNPSMFVTNMSTCAGIVTTQDWEQKVGSVRVGPLRSFCSGELSDQTRCHNCVAAGLKVAFQLTSVDPNASDVNQCFSFASLYAAAVVNPQGTTDDTTMGCILNIPLTKGSSKNRGKVVKVVFTVLGCVIIAFVVMVIIYRKWDKRRKENVYHREIENGVRNSVLSNTGAKWFHVSELERATDRFSRRSVVGQGGDGVVYKGKLSDGTLVAIKENFDLENKGDEEFCYEVEIISKIRHRNLLALRGCCISSDNMKGKRRFLVYDFMPNGSLCYQLSLGGANRLTWPQRKNIILDVAKGLAYLHYEIKPPIYHRDIKATNILLDSKMSAKLADFGLAREGSEDQSHFTTRVAGTYGYVAPEYALYGQLTDKSDVYSFGIVILEIMSGRKVLDSLNSSADAITDWVWTLVESGKVEDVFDESIREGPEKMMERFVHVGMLCAHAVMALRPSIAEALKMLEGDTEIPKLPDRPVPLGHASFQSSLLHGLQRSGRSMAC 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00922 603 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Cca05g00922 603 Pfam SPARK 22 185 IPR043891 -
Cca05g00922 603 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 19 592 - -
Cca05g00922 603 SUPERFAMILY Protein kinase-like (PK-like) 272 566 IPR011009 -
Cca05g00922 603 PANTHER OS01G0253100 PROTEIN 19 592 IPR045271 GO:0004714|GO:0006468
Cca05g00922 603 Gene3D Phosphorylase Kinase; domain 1 254 373 - -
Cca05g00922 603 ProSitePatterns Serine/Threonine protein kinases active-site signature. 418 430 IPR008271 GO:0004672|GO:0006468
Cca05g00922 603 Gene3D Transferase(Phosphotransferase) domain 1 374 573 - -
Cca05g00922 603 ProSiteProfiles Protein kinase domain profile. 293 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00922 603 Pfam Protein kinase domain 295 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00922 603 SMART serkin_6 293 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00922 Cca-Chr5 24813337 24815336 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00922 16 595 Receptor kinase-like Gene Family AT1G11050 48.600 0.0 549
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Cca05g00922 Pkinase 1.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00922 - - gmx:100798901 972.615