Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00921 ATGGCTAAGCAAGTGATGCTAATGCTCCTTCCCCTCCCCATGATCATGTTTTTCCTCATAACCGTGCATGGTGCTGAATCCTCATCATGCCCCATGGATCTCAGCTATGTTGAGACCTTTCCATGGGACACTTCAACATGTAGAAACCCAATTGATAAGGGTCATTGTTGCCAAGCTTTGCTTAGTGTTATAGGCATAGGGCTAGCCCAACACCTTAAAGAAACATCCTTGTTTCAACTTCCCAATGTAAACACTTCCTCCACCTGTTTGTCAAATTTCCAGGAGAAACTCGAAGCTTTGGGAATTGACCCATCTTTGGTCCCTTCTTGTTTCCCTAACCCATCACAGTTTGTTACCAACTCTTCCGTATGTGCAGGTATTGTGACACTTGAAGATTGGAAGCAAAAAGTGGGTTTGATTAGCCCTGTTGACACTTCTTGCAATGGGGACCTAAGTGATCAAACTAGGTGCAGCATTTGTTCTGATGCTGGCCTCAAGGTGACTTCACAGCTCAATGATTTAGGCACGGCTAGTTGCATACTAGGCATGCCACTGTCTGTTAAAGGGTCATCAAATAAAGTGCTGAAAATTGTCTTTGGGTTGTTGGGTGCTGTTGTTGGTATTGTGCTTGCTTTTGTGCTGTTTGTCATGTACAGGAAGTGGGATAAGAGAAGGAAGGAGAGTAGGTATCATAGGTCAGTTGAAAACGGTGTGAGGAACAGTGTTTTGCCTAATACTGGGGCAAAGTGGTTTCACATATCGGAGCTTGAACGTGCCACTAACAAATTTAATCAGAAGAATATGGTTGGCCAAGGCGGTGATGGTGTTGTGTACAAAGGGACTCTTGCGGATGGCACTGTGGTTGCAGTTAAGGAGATTTTTGATTTGGAAACTAAAGGGGATGAGGATTTCTGCTATGAGGTGGAGATCATAAGCAAAATAAAGCACAGGAATCTTCTTGCACTTCGGGGTTGTTGCATTTCAAGTGATAATTTGAAAGGTAAAAGGAGGTTTCTGGTTTATGATTTCATGCCTAATGGTAGTCTCAGTTACCAATTGTCCATCACTGGGGCTAATAGGCTAACGTGGCCACAAAGGAAGAACATAATCCTTGATGTGGCTAAGGGGCTTGCTTATTTGCACTATGAAATCAAACCCCCAATTTATCACCGTGACATTAAGGCCACCAACATACTTTTGGATTCCAAAATGAAGGCCAAAGTGTCAGATTTTGGGTTGGCCAAGCAAGGCAATGAGGGCCAGTCTCATCTCACCACAAGGGTGGCTGGCACATACGGTTATTTGGCACCAGAGTATGCTCTGTATGGACAACTAACAGAGAAGAGTGATGTGTACAGTTTTGGCATTGTGATTCTTGAGATCATGAGTGGGAGAAAAGTGCTTGATGCAATGAATTCATCAGTGGTTTTAATCACGGATTGGGCATGGACACTTGCAAAATCAGGGAACATTGAGGATATTTTTGACGAGTCAATAAAAGAAGGGCCAGAAAAGATCATGGAAAGGTTTGTTCTTGTGGGGATACTTTGTGCTCATGCAATGGTGACGTTAAGGCCTACTATTGCTGAGGCACTTAAGATGTTAGAGGGTGACATTGACATTCCCCAATTACCTGATAGGCCAGTACCACTTGGTCATGAGTCCTTTCAATCTTCTTTTTTGCATGGTTTGCAAAGAAGTGGAAGATCAACGCCTTTTCTTTCATCTTATTCAACCACTATCAGCACAAGTATGAGCACAATGTAA 1767 0.4318 MAKQVMLMLLPLPMIMFFLITVHGAESSSCPMDLSYVETFPWDTSTCRNPIDKGHCCQALLSVIGIGLAQHLKETSLFQLPNVNTSSTCLSNFQEKLEALGIDPSLVPSCFPNPSQFVTNSSVCAGIVTLEDWKQKVGLISPVDTSCNGDLSDQTRCSICSDAGLKVTSQLNDLGTASCILGMPLSVKGSSNKVLKIVFGLLGAVVGIVLAFVLFVMYRKWDKRRKESRYHRSVENGVRNSVLPNTGAKWFHISELERATNKFNQKNMVGQGGDGVVYKGTLADGTVVAVKEIFDLETKGDEDFCYEVEIISKIKHRNLLALRGCCISSDNLKGKRRFLVYDFMPNGSLSYQLSITGANRLTWPQRKNIILDVAKGLAYLHYEIKPPIYHRDIKATNILLDSKMKAKVSDFGLAKQGNEGQSHLTTRVAGTYGYLAPEYALYGQLTEKSDVYSFGIVILEIMSGRKVLDAMNSSVVLITDWAWTLAKSGNIEDIFDESIKEGPEKIMERFVLVGILCAHAMVTLRPTIAEALKMLEGDIDIPQLPDRPVPLGHESFQSSFLHGLQRSGRSTPFLSSYSTTISTSMSTM 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00921 588 PANTHER OS01G0253100 PROTEIN 17 178 IPR045271 GO:0004714|GO:0006468
Cca05g00921 588 PANTHER OS01G0253100 PROTEIN 177 564 IPR045271 GO:0004714|GO:0006468
Cca05g00921 588 Pfam Protein kinase domain 264 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00921 588 Pfam SPARK 26 173 IPR043891 -
Cca05g00921 588 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 17 178 - -
Cca05g00921 588 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 177 564 - -
Cca05g00921 588 SUPERFAMILY Protein kinase-like (PK-like) 242 536 IPR011009 -
Cca05g00921 588 CDD STKc_IRAK 269 537 - -
Cca05g00921 588 Gene3D Phosphorylase Kinase; domain 1 224 343 - -
Cca05g00921 588 Gene3D Transferase(Phosphotransferase) domain 1 344 541 - -
Cca05g00921 588 ProSitePatterns Serine/Threonine protein kinases active-site signature. 388 400 IPR008271 GO:0004672|GO:0006468
Cca05g00921 588 ProSiteProfiles Protein kinase domain profile. 263 522 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00921 588 SMART serkin_6 263 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00921 Cca-Chr5 24805564 24807411 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00921 22 565 Receptor kinase-like Gene Family AT1G11050 49.336 0.0 547
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Cca05g00921 Pkinase 8.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00921 - - ccaj:109788171 1130.55