Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00920 ATGAGGCACCCATCATCGTCATCATCGACAACCACGAAGAACAAGAGGAGCAACACTAGTAGCACCACCTGCGACAATAGTAACAACAACATTGGTGGCAGCGCAaacacgaacacaaacgccaacaccaacaccaacaccaacaccaacacGACCACTCCCTGCTGCAACAAGGTAGGGTTGAAGCGGGGGCCATGGACGCCGGAGGAAGACGAGGTGTTGGCGAATTACATCAAGAAAGAAGGTGAGGGTCGCTGGAGAACGCTCCCCAAGCGCGCCGGCCTCCTCCGCTGCGGCAAGAGCTGCCGCCTCCGCTGGATGAACTACCTCCGCCCCTCCGTCAAACGCGGCCACATCGCCCCTGACGAGGAAGATCTCATCCTCCGCCTCCACCGTCTCCTCGGTAACCGGTGGTCTTTGATAGCTGGGAGGATTCCTGGAAGAACAGACAATGAAATAAAGAATTATTGGAACACGCATCTAAGTAAGAAGCTTATTAGCCAAGGGATTGATCCTAGAACTCACAAGCCTCTAAACCCACCTTCTATAAATATTCCTTCTTCTTCTAATAAACCTCCTTCAATGATCATCTCCAACCACAATCCTCGTCATGATATCACTAATATTGTTAACCAAGGAGTTCAAGTTCATGTTCATCATTTGGGTCAACATCAACATCAACAAACCCAGGCTTGTAATCCCTATGATCACAATCAAAATGTTAGTAACCCGGTTGTACCTGCGACTGTAACCACCGATGATGTTTCTGCGATGGGTTTCATGGACAATGAGGACTGCAATGATGATATCAACATCAACTATTACTCGGACGATGTTTTTTCTTCCTTCCTCAACTCTTTGATCAACGATGAAGCCTTCGCGGCGCAACAGCACCAGGTGCAAACAGAGATCCCGAGTGAGCGTAGCATTCCACTACCATGTGATGATCCTCTGGTTTCAATCACCACTGCTCCTCATGCACCGCAAGGTTACGATGATGACCTTGGGGTGTTATGGGAATCGCCACTTGTACCTGCTACAACTTTCAGCCAAAACAACGTTAACGACCCCAACATCACCAAGAGGGTTCTTGATCAATAG 1101 0.4678 MRHPSSSSSTTTKNKRSNTSSTTCDNSNNNIGGSANTNTNANTNTNTNTNTTTPCCNKVGLKRGPWTPEEDEVLANYIKKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNPPSINIPSSSNKPPSMIISNHNPRHDITNIVNQGVQVHVHHLGQHQHQQTQACNPYDHNQNVSNPVVPATVTTDDVSAMGFMDNEDCNDDININYYSDDVFSSFLNSLINDEAFAAQQHQVQTEIPSERSIPLPCDDPLVSITTAPHAPQGYDDDLGVLWESPLVPATTFSQNNVNDPNITKRVLDQ 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00920 366 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 110 IPR017930 -
Cca05g00920 366 PANTHER TRANSCRIPTION REPRESSOR MYB5-LIKE 46 308 - -
Cca05g00920 366 Pfam Myb-like DNA-binding domain 63 110 IPR001005 -
Cca05g00920 366 Pfam Myb-like DNA-binding domain 121 161 IPR001005 -
Cca05g00920 366 MobiDBLite consensus disorder prediction 1 50 - -
Cca05g00920 366 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 46 308 - -
Cca05g00920 366 SMART sant 115 163 IPR001005 -
Cca05g00920 366 SMART sant 62 112 IPR001005 -
Cca05g00920 366 MobiDBLite consensus disorder prediction 170 191 - -
Cca05g00920 366 ProSiteProfiles Myb-like domain profile. 111 161 IPR001005 -
Cca05g00920 366 Gene3D - 120 182 - -
Cca05g00920 366 CDD SANT 65 110 IPR001005 -
Cca05g00920 366 ProSiteProfiles Myb-like domain profile. 58 110 IPR001005 -
Cca05g00920 366 CDD SANT 121 161 IPR001005 -
Cca05g00920 366 Gene3D - 60 116 - -
Cca05g00920 366 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 111 165 IPR017930 -
Cca05g00920 366 SUPERFAMILY Homeodomain-like 60 157 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00920 Cca-Chr5 24784370 24786059 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00920 49 332 MYB Transcription Factor Family AT3G13540 51.761 7.48e-86 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca05g00920 Myb_DNA-binding 2.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00920 K09422 - gmx:100797847 423.32