Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00919 AACTTGAATTCCTTCCAATCCAATGATCCATCACAATTGTCGTGGATGGGTCCAGTTCCGGGCGATATTGCTGAAGTCGAGGCATATTGTAGGATCTTTAGGAATTCAGAAAGGCTTCATTCTGCATTAATGGATGCACTATGTAATCCGTTGACTGGTGAATGTAGTGTCTCATATGAGGTTCCATCTGATGAGAAACCTCAATTAGAAGATAAAATAGTTTCTGTCCTTGGATGCATGATATCTCTTGTGAACAAAGGCAGGGAGGATGTTCTTTCTGGAAGATCCTCAATTATGAATGCCTTTCGTGCTGCAGAGGTTAGCACAACAGAGGATAAGCTCCCCCCACTTGCCCTTTTTAGGAGTGAGATGAAAAGGTGCTCTGAGAGCTTGCATGTTGCTCTTGAGAACTATTTGATACCCGATGATGATCGAAGCTTAAATGTATGGCGAAAACTTCAAAGACTGAAGAATGTCTGCTATGATTCTGGTTTTCCTCGTCGGGAGGGTTGTCCTTGTCACACATTATTTGCAAATTGGAGTCCTGTATATTTATCCGCTTCTAAAGAGGACACAGAATCCAAGGACAGAGAGGCAGCCTTTTGGACTGGTGGTCAGGTAACAGAAGAAGGTCTTAAGTGGTTACTGGATAAAGGATATAAGACCATTATAGATATCAGAGCAGAGAATGTAAAAGATAACTTCTATCAAGAGGCTCTTCGTGATGCTATTTCATTTGGAAGAATTGAATTGGTAAAAATCCCAGTTGAAGTTAAGACTGCACCTACAATGGAACAGGTTGTGAGGTTTGCATCTTATGTTTCTGATAGCAGCAAAAGGCCTATCTATGTTCACAGTAAGGAAGGAGTTTGGAGAACATCTGCCATGGTCTCCCGATGGAGGCAGTACATGACTCGATCTACATCACAAATTGTTTCTAATCCATCAATTACACCCTATGACATGTTATCCCGTTATACAAATGGATCTGCAAAACTCCAGAACTCTTCAACGACTGCAGAGAGATCCTCCCTGGAAAATGATATCAGTTCATTGCAAGAGAGTTTGGGCTCAACACATGGTTCTGTTGGAACATTTGACAGAAGCACCTCTCAAAAGAAGTATAATGATGAAGCACAAAGTACTACAACCTCAACTGAAGTTTCTATTGATAATGGGGAATTATCAGAAGCCACTGCTGCTAATGAGGAAGGATATTTTCCAAGTGACTCCAAAAACATTAACCCTTTAAAAGCTCAAGTTCCTCCTTGTGATATTTTTTCCAAAAGAGAGATGTCAAATTTTTTTGGAAGACGGAATATCTCACCACCCTCTTTTGTCAATTATCAGAGCAGAAGGTTGGAATGCTCTCTGCAACCAAGGAACATGAATATCACGAAACCACAGGGAGGTGTGGTTGTCAGAAGTAGCGATAATCCCATACCTAACACTGTAGTTCCAGAAAGTTCGAATGGATCTGCCGATGTGGATCATCTATCAAGAGAGCCCCAGGTTACAGTTGGTGGCAATTGGAAGTTAGTAAACGGGAGTACTTCTGGTTCTGTTAAGACAACAGTGAATGGATTTAGTGAAGGGGAAATGAATTACATAACTAATGCCAATGTTTCCAACACTGTGAAGGATGATATTAATGTCACAACTAATTTTCAAAGGGTTGAAGATCAAACGGTTAAGGATGGGTTGGCCTTAAATGATGATGACTTGGGATCCATTGAAGGAGATATGTGTGCTTCTACAACAGGAGTTGTAAGGGTGCAATCTAGAAAGAAAGCTGAGATGTTCCTAGTTCGAACAGATGGATTTTCTTGTACCAGAGAAAAAGTGACTGAATCTTCTTTGGCTTTCACTCATCCTAGCACCCAGCAGCAGATGCTTATGTGGAAGTCTATGCCAAAGAATGTGTTATTGTTGAAAAAGCTGGGAGAAGAACTAATGGAAGAAGCAAAAATGGTTGCTTCTTTTCTTTATCACCAAGAGAAAATGAATGTTCTTGTGGAACCCGATGTGCATGATATATTTGCTAGAATTCCAGGGTTTGGATTTGTTCACACCTTCTATAGTCAAGATACCAGTGATCTACATGAGAAAGTAGATTTTGTAGCATGCTTGGGTGGAGATGGTGTTATACTGCATGCATCAAATCTATTCAGAGGTGCTGTTCCCCCTATTGTGTCATTTAACCTTGGCTCCCTTGGTTTTTTGACTTCTCATGATTTTGAAGATTACAAGCAAGACTTACGACAAGTCATCCATGGAAATAATACACGAGATGGTGTTTACATTACACTTAGAATGCGTCTCCGATGTGAAATTTTTCGTAAAGGTAAAGCAATGCCGGGGAAAGTATTTGATATTCTCAATGAGGTTGTTGTCGATCGGGGTTCTAATCCATACCTTTCAAAGATTGAATGCTATGAACATGATCGGCTTATAACTAAAGTACAAGGTGATGGAGTCATCGTGGCCACCCCTACAGGAAGTACTGCCTATTCTACAGCTGCCGGAGGTTCCATGGTCCATCCAAACGTTCCTGGCATATTGTTCACCCCAATCTGTCCACATTCACTCTCATTTAGACCAGTTATACTTCCAGATTCTGCCCAACTAGAATTAAAGATTCCAGAAGATGCTAGAAGTAATGCCTGGGTTTCATTCGACGGGAAGAGAAGGCAGCAACTCTCAAGAGGCGATTCGGTCCGAATATCTATGAGTCAACATCCCCTTCCAACTGTTAACAAGTTTGACCAAACTGGTGATTGGTTCCGTAGCTTGATTCGCTGCCTAAACTGGAATGAGAGGCTTGATCAAAAGGCTCTTGCCATGTCAAGGATATGCGTCAAGAATCTCCCCAAAAATGTCGCAGAGGATCGACTGCGGGAATTCTTCTCACAGAAAGGAGAAATCACTGACGTCAAGCTCATGCGTACCAAAGATGGTAAGAGTCGTCAATTTGCTTTTATTGGATTTCGTACTGACGATGAAGCTCAAGAAGCCATTCGATATTTCAATAGATCGTATCTTCAAACATCTAGAATTACTTGTGAGGTGGCTCGGAAACATGGGGATGAAAATCTTCCCCGTCCGTGGAGTCGGCATTCGAAAAAGAAAGGCGACAAAGGCAATGAAGTGACTGCCCCGGATGTGGATAAGCATGCTAGAGCTAAGGGACAAGGGAAAATTTTGAAGGATGAGGGTGTTCATGTTGATGACCCGGAGCTTCAGGATTTTCTTCAGGTCATGCAGCCTCGGGTTAAGTCCAAAATGTGGGCGAATGATACGGCGGTTGTCAACAATGTTGGCAACAACAAAGCAGTGTCGAATGAGGATAAAGAAGGTGCATCGGTTGCAATTGATCAGATTGACTCGTCTGAAGATGGGTTACCTGATGATTCTGAACCCAGCAAGTCACGTGAGCTTGAACGTGAGGAAGTTGTTTCTGATATGGATTATTTTAAGAGTAGGGTGAGGACAGAGTGGTCTGATTCTGAAAGTAGtgatgatgaagatggtgatgaagatgatgatgataatgaaaatgacgacaaagatgatcgtagtgatgctagtgaagatgaagaAAATTGTGATTCAAAAAATGGTGCTCAAGAGGTTGACCTAGAGGGCCAAGAAGATACTTGCAGAGAGGATGTTACCCATGAAAAGACTCAAGAGAAGGCTACTGAGCAAGGGGGGCAGTTATCAAAACCAGAAGACAGGAAAGGAGTCATTGAGTCCTGTCGGTTGTTTGTCCGTAATCTGCCATATACAACTACTGAGGAGGAACTGGAAGAACATTTCAATCGCTTTGGTAGCATCTCACAGGTTCATCTGGTTGTTGACAAAGATACAAAACGATCCAAAGGAATAGCATATATTCTTTACACAGCTCCAGAATTTGCAGCCAGGGCTTTAGAAGAGTTAGACAATTCAATCTTTCAAGGAAGATTATTGCATATAATGCCAGCCTTACAAAGACATTCAGATAATCAAGAGAACAATGATTTGAAGGACCAAAAATCTAAAACCCTTAAACAACAGAGAGAGGAAAAAAGGAAAGCAGCTGAAGCTAGTGGAGATACTAGAGCATGGAATAGTCTGTTCATGCGCCCTGATACAGTTGTGGAAAATATAGCTCGGAAATTTGGGGTTAATAAAAGTGATTTACTTGACCGAGAAGCTGATGATCTTGCTGTACGTATTGCTCTGGGGGAGACTCAAGTGATTTCAGAGACAAAAAAGGCATTTAAAAATGCTGGAGTGAATGTGGATGCTTTGGAGGCACTTGCTAATAATAAAATAGATGGCTTAAAAAGAAGTAATCATGTGCTATTAGTGAAGAACTTGCCATACGGTTCTACAGAAAATGAACTTGGAAAGTTGTTTGGGAAATTTGGTAGTTTGGATAAAATAATTCTCCCTCCTACGAAGACATTGGCACTGGTTGTTTTCCTTGAACCAGCAGAAGCTCGAGCAGCTTTTAGAGGTTTAGCTTACAAGCGTTACAAGGATGCTCCATTATACTTGGAGTGGGCTCCTTCCAATATTCTTAGTCAAAGTTCAACATCTAAAAATAATGAAATGAATGGTGCAATTGGTGAAAATGATGCCAAGAGGCAGATATTGGAGCAACACGTGGAAAGAATATCAGATGTAGATATTGATCCTGACAGAGTAGAGGCTCGGTCACTGTTTGTCAAGAACCTAAATTTCAAGACAACAGATGAAAGTCTGAAGAAACATTTTAGTGAACTCATGAAAGAGGGAAGAATTTTGAGTGTCAAGGTGAAGAAACATTTAAAAAATGGGAAAAATGTTTCTATGGGATTTGGATTTGTTGAGTTTGACTCCCCTGAAACTGCTACAAATGTTTGCAGAGATTTACAGGGGACAGTTCTGGACAGCCATGCTCTTATTTTACAACTTTGTCATGTCAAGAATGATGGGCAAAAACCAAAGACAGTTGAGAAGGATAAGAGTTCAACAAAATTGCTCATAAAAAATGTTGCTTTTGAAGCAACAGAGAAGGATCTGAGACAATTGTTTAGCCCATTTGGCCAGATTAAAAGCTTAAGGTTGCCAATGAAGTTTGGAAACCATAGAGGCTTTGCTTTTGTAGAGTATGTTACTCAGCAGGAGGCACAGAATGCCCTCAAAGCACTTTCAAGCACCCATCTCTATGGGAGGCATCTGGTGATAGAGAGAGCGAAGGAAGGTGAGAGTTTGGAAGAACTGCGGGCCAGAACAGCTGCCCAATTTAGTGAGGAACACAATGGATTATCCAAGAAAAGGAAGCACGTTGACATCTTAGACGAAGGAAAGATGAAGTTTGGAAGGATTGCTGACTAG 5367 0.4058 NLNSFQSNDPSQLSWMGPVPGDIAEVEAYCRIFRNSERLHSALMDALCNPLTGECSVSYEVPSDEKPQLEDKIVSVLGCMISLVNKGREDVLSGRSSIMNAFRAAEVSTTEDKLPPLALFRSEMKRCSESLHVALENYLIPDDDRSLNVWRKLQRLKNVCYDSGFPRREGCPCHTLFANWSPVYLSASKEDTESKDREAAFWTGGQVTEEGLKWLLDKGYKTIIDIRAENVKDNFYQEALRDAISFGRIELVKIPVEVKTAPTMEQVVRFASYVSDSSKRPIYVHSKEGVWRTSAMVSRWRQYMTRSTSQIVSNPSITPYDMLSRYTNGSAKLQNSSTTAERSSLENDISSLQESLGSTHGSVGTFDRSTSQKKYNDEAQSTTTSTEVSIDNGELSEATAANEEGYFPSDSKNINPLKAQVPPCDIFSKREMSNFFGRRNISPPSFVNYQSRRLECSLQPRNMNITKPQGGVVVRSSDNPIPNTVVPESSNGSADVDHLSREPQVTVGGNWKLVNGSTSGSVKTTVNGFSEGEMNYITNANVSNTVKDDINVTTNFQRVEDQTVKDGLALNDDDLGSIEGDMCASTTGVVRVQSRKKAEMFLVRTDGFSCTREKVTESSLAFTHPSTQQQMLMWKSMPKNVLLLKKLGEELMEEAKMVASFLYHQEKMNVLVEPDVHDIFARIPGFGFVHTFYSQDTSDLHEKVDFVACLGGDGVILHASNLFRGAVPPIVSFNLGSLGFLTSHDFEDYKQDLRQVIHGNNTRDGVYITLRMRLRCEIFRKGKAMPGKVFDILNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPGILFTPICPHSLSFRPVILPDSAQLELKIPEDARSNAWVSFDGKRRQQLSRGDSVRISMSQHPLPTVNKFDQTGDWFRSLIRCLNWNERLDQKALAMSRICVKNLPKNVAEDRLREFFSQKGEITDVKLMRTKDGKSRQFAFIGFRTDDEAQEAIRYFNRSYLQTSRITCEVARKHGDENLPRPWSRHSKKKGDKGNEVTAPDVDKHARAKGQGKILKDEGVHVDDPELQDFLQVMQPRVKSKMWANDTAVVNNVGNNKAVSNEDKEGASVAIDQIDSSEDGLPDDSEPSKSRELEREEVVSDMDYFKSRVRTEWSDSESSDDEDGDEDDDDNENDDKDDRSDASEDEENCDSKNGAQEVDLEGQEDTCREDVTHEKTQEKATEQGGQLSKPEDRKGVIESCRLFVRNLPYTTTEEELEEHFNRFGSISQVHLVVDKDTKRSKGIAYILYTAPEFAARALEELDNSIFQGRLLHIMPALQRHSDNQENNDLKDQKSKTLKQQREEKRKAAEASGDTRAWNSLFMRPDTVVENIARKFGVNKSDLLDREADDLAVRIALGETQVISETKKAFKNAGVNVDALEALANNKIDGLKRSNHVLLVKNLPYGSTENELGKLFGKFGSLDKIILPPTKTLALVVFLEPAEARAAFRGLAYKRYKDAPLYLEWAPSNILSQSSTSKNNEMNGAIGENDAKRQILEQHVERISDVDIDPDRVEARSLFVKNLNFKTTDESLKKHFSELMKEGRILSVKVKKHLKNGKNVSMGFGFVEFDSPETATNVCRDLQGTVLDSHALILQLCHVKNDGQKPKTVEKDKSSTKLLIKNVAFEATEKDLRQLFSPFGQIKSLRLPMKFGNHRGFAFVEYVTQQEAQNALKALSSTHLYGRHLVIERAKEGESLEELRARTAAQFSEEHNGLSKKRKHVDILDEGKMKFGRIAD 1788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00919 1788 Pfam ATP-NAD kinase C-terminal domain 793 919 - -
Cca05g00919 1788 Gene3D - 941 1061 IPR012677 -
Cca05g00919 1788 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 949 1026 IPR000504 GO:0003723
Cca05g00919 1788 Coils Coil 335 355 - -
Cca05g00919 1788 SMART rrm1_1 1254 1327 IPR000504 GO:0003723
Cca05g00919 1788 SMART rrm1_1 1669 1740 IPR000504 GO:0003723
Cca05g00919 1788 SMART rrm1_1 1449 1516 IPR000504 GO:0003723
Cca05g00919 1788 SMART rrm1_1 1569 1647 IPR000504 GO:0003723
Cca05g00919 1788 SMART rrm1_1 950 1022 IPR000504 GO:0003723
Cca05g00919 1788 Gene3D - 1549 1660 IPR012677 -
Cca05g00919 1788 PANTHER NAD KINASE 6 946 - -
Cca05g00919 1788 SUPERFAMILY NAD kinase/diacylglycerol kinase-like 643 941 IPR016064 -
Cca05g00919 1788 MobiDBLite consensus disorder prediction 1107 1245 - -
Cca05g00919 1788 PANTHER NAD/NADH KINASE FAMILY PROTEIN 6 946 - -
Cca05g00919 1788 MobiDBLite consensus disorder prediction 1169 1197 - -
Cca05g00919 1788 MobiDBLite consensus disorder prediction 1336 1364 - -
Cca05g00919 1788 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1568 1651 IPR000504 GO:0003723
Cca05g00919 1788 MobiDBLite consensus disorder prediction 355 393 - -
Cca05g00919 1788 CDD RRM5_RBM19_like 1568 1649 IPR034423 -
Cca05g00919 1788 CDD RRM4_RBM19_RRM3_MRD1 1448 1519 - -
Cca05g00919 1788 SUPERFAMILY RNA-binding domain, RBD 1247 1335 IPR035979 GO:0003676
Cca05g00919 1788 MobiDBLite consensus disorder prediction 1135 1168 - -
Cca05g00919 1788 Gene3D - 1162 1343 IPR012677 -
Cca05g00919 1788 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 951 1019 IPR000504 GO:0003723
Cca05g00919 1788 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1450 1511 IPR000504 GO:0003723
Cca05g00919 1788 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1570 1644 IPR000504 GO:0003723
Cca05g00919 1788 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1670 1737 IPR000504 GO:0003723
Cca05g00919 1788 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1255 1325 IPR000504 GO:0003723
Cca05g00919 1788 Gene3D - 1661 1769 IPR012677 -
Cca05g00919 1788 Gene3D - 1441 1544 IPR012677 -
Cca05g00919 1788 SUPERFAMILY RNA-binding domain, RBD 948 1036 IPR035979 GO:0003676
Cca05g00919 1788 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1668 1744 IPR000504 GO:0003723
Cca05g00919 1788 Gene3D Protein tyrosine phosphatase superfamily 194 329 IPR029021 -
Cca05g00919 1788 MobiDBLite consensus disorder prediction 1334 1364 - -
Cca05g00919 1788 CDD RRM6_RBM19_RRM5_MRD1 1668 1742 - -
Cca05g00919 1788 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 201 312 IPR029021 -
Cca05g00919 1788 SMART rrm2_1 1254 1327 IPR003954 GO:0003676
Cca05g00919 1788 SMART rrm2_1 1569 1647 IPR003954 GO:0003676
Cca05g00919 1788 SMART rrm2_1 950 1022 IPR003954 GO:0003676
Cca05g00919 1788 MobiDBLite consensus disorder prediction 1029 1052 - -
Cca05g00919 1788 Hamap NAD kinase [nadK]. 639 937 IPR002504 GO:0003951|GO:0006741
Cca05g00919 1788 Gene3D - 628 938 IPR017438 -
Cca05g00919 1788 CDD RRM1_MRD1 949 1024 - -
Cca05g00919 1788 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1448 1520 IPR000504 GO:0003723
Cca05g00919 1788 CDD RRM3_RBM19_RRM2_MRD1 1254 1327 - -
Cca05g00919 1788 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1253 1331 IPR000504 GO:0003723
Cca05g00919 1788 MobiDBLite consensus disorder prediction 1198 1245 - -
Cca05g00919 1788 Pfam ATP-NAD kinase N-terminal domain 672 759 IPR002504 GO:0003951|GO:0006741
Cca05g00919 1788 SUPERFAMILY RNA-binding domain, RBD 1567 1744 IPR035979 GO:0003676
Cca05g00919 1788 Gene3D - 773 913 IPR017437 GO:0003951|GO:0019674
Cca05g00919 1788 SUPERFAMILY RNA-binding domain, RBD 1445 1535 IPR035979 GO:0003676
Cca05g00919 1788 Coils Coil 1343 1363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00919 Cca-Chr5 24750902 24766739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00919 1569 1752 Eukaryotic Initiation Factors Gene Family AT1G71770 30.108 2.80e-11 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00919 K00858 - gmx:100820030 1682.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00919 05 24750902 24766739 Cca05g00919 05 24750902 24766739 ECH