Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00918 GTGCCAAATATAAGGTGGCAAAAAAATGGGGCCACATTCCTATTGTGACAAGGAAATGGTTTGATCAATCTATTGCTCGAAGAGCATGTCTGAATGAGGAGTCCTTCCCTGTTCAGCATGGATCTGTATCTTCACATAAAGTAACTAAGGACTCAACAATGCAACATAGCCAAGAAATGGATATTGGGAGATTGCAATCTGCAGCATCCTCAGGTGCTACAGATTCAAATATGCAAGTTCATTGCACTGAGTTTATGGATAGAGATCTAGAAGCTACGCAGCAGTCACAACCCGTGTCCTCAGTTCCAAATGCTCCTTTATTTGTTAAAGAGGCATATGCTGAACCTTCACCGTTGAAGACCAGCAGTGAATTGAACTTTGATGGCGCTGTTGCAAATGATTCTGAATCGGATGATACTGACCTTTACTTATCAAAGTGCAGAGTATTATTGGTTGGTTTTGAAGCTCGTGAAATGCGGAAACTAGTTAATATGGTGCGTAAAGGTGGAGGCTCCCGGTATATGTATTTTAATGACAAATTAACCCACATAGTGATTGGGAATCCTACTGAAATGGAAAAGAAGGATGTGAGGAGTCTTGCTGCTTTAGGTGTAATTTATGTTGTTAAAACTACATGGCTTGAAGATTGTGACCGTGAAAAGAAAGAAGTCCCTGTTCTTAGGAGACACATTGCATATGATCTACTTCATCAAAAAGCAAGCTTGGTAAAAGGAGTAATAGGCAGTATGTCTATGGATCATGGTAAAAGCTCCAACTTTCATCAAAGCTTACAGAGTGATCAGGGAGACTTTGAAATTATAAAGCCAGAATCTTTGGAGAAAAGACAAGAAGAGAAAACAGATAAGGGTGTAAATGGTCACTTACTCGGTAAAGCAACAGGCAGAACTATGCTGCAAAATCAATATCCTGACAATAAATCAAGGGCACAAAGGATGACCCAACATGACTCCAGTGTTCAATATGCAAAGTCAACAAATATTTTCAGAGGGAAACTATTTTGTTTCTCAAATTTATTTCCTGAAGAAAGGAGAGCTGAGATTGTTCAATGGATAAGTCAAGGGGGAGGAGAGATAATAAGTGGGCAAACAAAACACTCTGTCCACTATACTATTGAGTGTCATGGTGTAACACCCATGTTGACTGGTCATTCCAAGAGTTTACATATTTCTAGTCATTGGATACGATCTTGTTTGGAGGTTGAATCCTTGCTGGATGTTGACAGTCACATTCTTTATTCTCCACTTCCCTGCCGTGTTCCCTTGCCTGGGTTTGAAAGCTTCTGGTTTTGTGTTTCACAGTATGAGGAGAAAGACAGAATTCTCCTAAGGAACTTGTGTTTTGTTTTGGGTGCTAAATTTGTGGAGAAGTTGACTAAGAAGGTCACCCATTTGTTGTGTAAATTCACCAATGGGCTCAAGTACGAGGCTGCTTGTAAATGGGGCATCCAATCAGTTACATCGGAATGGATATTTGAATGCGTCAAACAGAATGGAGTTGTTGCTATTGATCAATTTTTACCAAAAGAAGTCACTGCTCAAGACCGAGAGGCAGGAATTTGCACTGTAAGTCAATTTCCTACCCAGGCTTTTGATGTGACGAGTGACATGCCCTCTCAGTTGTCAAGTCAATCACAAACTTTAAGAAGCACCGCAGATAAAAATGTCAGCTGTGGAATTGATAATCATGAGACCAATTTTAAGATACCAAGTATTTATAGCAGCAAAAAGGCAAGGCTTATGGAGGAACCTTGCCTATCCAATAAGATGCCTTTGGCATCAAATTCAGGTATTCATCCCTCTGACAAATTGTTTTCCAAAGACAATATGGTTATAGATGATGGGGAGGTTTGTCATGCTGTTCCTGATGTTGCTGCTGCAATTGAGGACTTGTTAGAGCAGACAAGCAAGATGCATGATCAGAGGTCCCCAGCGCAGACAGGGTGTGAGAGAAGTATTTACCCATCTGATCGTTCTGTCCTTGGTGAAGATAATTCCAATCCTCGTACTGTCTTTGGATTATCTAAACACTGGTTGAACAGAAGTGGCAGAGATGATAACGGGGAGGGCTCTGAAGAAAGAAGAGCAGGAATATATTATGGTTTTAGTGAAACACAGACAGAATCTCAGGTTGTTGGTTATGAAGAAGATTTATCAGGAAGGCAAATGCTTATTGACAGAGTCCGAACTCGAAGTAGCATGCCACAGTGA 2228 0.4057 AKYKVAKKWGHIPIVTRKWFDQSIARRACLNEESFPVQHGSVSSHKVTKDSTMQHSQEMDIGRLQSAASSGATDSNMQVHCTEFMDRDLEATQQSQPVSSVPNAPLFVKEAYAEPSPLKTSSELNFDGAVANDSESDDTDLYLSKCRVLLVGFEAREMRKLVNMVRKGGGSRYMYFNDKLTHIVIGNPTEMEKKDVRSLAALGVIYVVKTTWLEDCDREKKEVPVLRRHIAYDLLHQKASLVKGVIGSMSMDHGKSSNFHQSLQSDQGDFEIIKPESLEKRQEEKTDKGVNGHLLGKATGRTMLQNQYPDNKSRAQRMTQHDSSVQYAKSTNIFRGKLFCFSNLFPEERRAEIVQWISQGGGEIISGQTKHSVHYTIECHGVTPMLTGHSKSLHISSHWIRSCLEVESLLDVDSHILYSPLPCRVPLPGFESFWFCVSQYEEKDRILLRNLCFVLGAKFVEKLTKKVTHLLCKFTNGLKYEAACKWGIQSVTSEWIFECVKQNGVVAIDQFLPKEVTAQDREAGICTVSQFPTQAFDVTSDMPSQLSSQSQTLRSTADKNVSCGIDNHETNFKIPSIYSSKKARLMEEPCLSNKMPLASNSGIHPSDKLFSKDNMVIDDGEVCHAVPDVAAAIEDLLEQTSKMHDQRSPAQTGCERSIYPSDRSVLGEDNSNPRTVFGLSKHWLNRSGRDDNGEGSEERRAGIYYGFSETQTESQVVGYEEDLSGRQMLIDRVRTRSSMPQ 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00918 741 MobiDBLite consensus disorder prediction 642 672 - -
Cca05g00918 741 Gene3D BRCT domain 326 423 IPR036420 -
Cca05g00918 741 ProSiteProfiles BRCT domain profile. 430 513 IPR001357 -
Cca05g00918 741 CDD BRCT_TopBP1_rpt2_like 428 503 - -
Cca05g00918 741 Pfam BRCT domain, a BRCA1 C-terminus domain 331 414 IPR001357 -
Cca05g00918 741 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 1 728 - -
Cca05g00918 741 Pfam twin BRCT domain 436 495 IPR001357 -
Cca05g00918 741 Gene3D BRCT domain 128 227 IPR036420 -
Cca05g00918 741 ProSiteProfiles BRCT domain profile. 138 230 IPR001357 -
Cca05g00918 741 SUPERFAMILY BRCT domain 134 224 IPR036420 -
Cca05g00918 741 ProSiteProfiles BRCT domain profile. 329 417 IPR001357 -
Cca05g00918 741 Gene3D BRCT domain 425 518 IPR036420 -
Cca05g00918 741 SMART BRCT_7 331 407 IPR001357 -
Cca05g00918 741 SMART BRCT_7 140 220 IPR001357 -
Cca05g00918 741 SMART BRCT_7 427 503 IPR001357 -
Cca05g00918 741 SUPERFAMILY BRCT domain 2 41 IPR036420 -
Cca05g00918 741 SUPERFAMILY BRCT domain 396 514 IPR036420 -
Cca05g00918 741 ProSiteProfiles BRCT domain profile. 1 37 IPR001357 -
Cca05g00918 741 SUPERFAMILY BRCT domain 332 419 IPR036420 -
Cca05g00918 741 MobiDBLite consensus disorder prediction 643 672 - -
Cca05g00918 741 Gene3D BRCT domain 1 40 IPR036420 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00918 2 739 Core DNA Replication Machinery Family AT1G77320 43.583 0.0 560
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00918 K10728 - gmx:100804966 1115.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00918 05 24703350 24721934 Cca05g00918 05 24703350 24721934 ECH