Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00912 ATGAAAATGCAGCAATTTGCCACCGCCGGAGAACCCAGCCACGGCGGCTCCGATGCCCGCACGGTGGTGGTGGGAGTGAAGATGGACTCCCACAGTAGGGAGTTGCTCACTTGGGCTTTGTTCAAACTTGCTCAGCCTGGTGATGTTGTGCTTGCTCTTCATGTTCTTGGGAATGATGAAATCGTGAATCGAGAAGGAAAATCCTCTTTGTTTTCGCTTGTCAAAGCATTTGAGTCTGTTCTTGCCGTTTATGAAGGATTCTGCGATTTGAAACAGGTGGATCTTAAGCTCAAAATATGTCGGGGTTCGTCAGTGAAGAAAATTTTGGTTCGAGAAGCGGATGCTTGTTCCGCAACACACATCCTAGTTGGAACACCTCATGGTCTTAGTAGAATTCGGCCATGTATATCTGTGGCAAAGTACTGTGCTAAGAAGTTACCAAAGGATTGTTGGGTTCTTGCGGTTAATAATGGGAAAGTTGTTTTCAAGAGAGATGGGTCACCCGCAACTCGTGCTGACATAAAAGGGCTTAATCATCAGGATCACAAAAATGGGTTGCTTGGTACACTCAGCAAGAGTTCACAAGTGCTAGATGTTGATGGTACAGTGATGAATGGAAAGGGTGGTGGCCAATTTTCGGATCACAGTTTAGCTAAGGCTTTTCTGGACTCAAAAGAGTTCAAGGGGAAGAAGGGGTGCTTTATTTGTGCTTCAACTCCAGCATTGTTTGATTCAACTTGTAAGAATTCAGAAGAAGAGTCTTGTGGTGAAGTTGAGGAGAAGAATCCTTTGGCAATAGTGCCTGTGCAGACCAATGGTGCTGCTTCTAAAGCTGGTTGGCCACTGCTTCATAGGAAAATTGTATCTGACGGGAAATGCCCTGAAAGATCAGTGTTGCGCCAGATCTCTGTGGTACAATGGGCAATGCAGTTACCCTCTAGAAATATTTCATATACTGCACATCATGACCATAAAACATATCATTTTGACCGGGATAAGGATCGGTTTTCGGGTCTAGACAGCAATTGTGGTGCTCTTGTTCCTGTGAATGCTGAAATAGGGACTGTTTCTTTGCCTGAACACAATTCAAGAAGCATTCCTAAGGAATTGGTGGGCCTTCATGAGAAATACTCATCCACTTGCACATTGTTTAAGTACCAAGAGCTTGTATCGGCAACATCAAATTTCTTGCCTGAAAATTTGATTGGGAAAGGAGGAAGCAGTGAGGTTTATAGAGGCTGCCTTCCTGATGGCAAGCAACTTGCCGTTAAGATCTTAAAGCCATCTGAGGAAGTTTTGAAGGAGTTTGTTCTAGAAATAGAAATTATCACTACCTTGCATCACAAAAACATTATTTCCCTCCTTGGGTTCTGCTTTGAGGATGGCAATCTTCTTTTGGTCTATGATTTCTTATCAAGAGGAAGCCTTGAAGAGAACCTCTATGGTAATAAGAAAATTCCACTTGTGTTTGGTTGGACTGAGAGATACAAGGTGGCAATGGGTGTTGCTGAGGCTTTGGAGTATCTGCATGATAATGAAGGCCAATCTGTGATCCATCGCGATGTAAAATCATCAAATGTTCTGTTATCTGAGGATTTTGAACCCCAGCTCTCTGACTTTGGACTTGCTAAATGGGCATCAACCTCTTCATCACACATAATCTGCACAGATGTTGCTGGAACCTTTGGTTACATGGCTCCGGAGTACTTCATGTATGGTAAAGTAACTGAGAAGATTGATGTCTATGCATTTGGTGTTGTGCTTCTTGAGCTTCTTTCAGGGAGAAAGCCCATAAGTGGTGATTATCCCAAGGGTCAAGAGAGCCTTGTCATGTGGGCAAGTCCAATTCTAAACAGTGGGAAGGCGTCACAATTGTTAGATCCTAGTTTGGGTGATAACTATGATCATGAAGAAATGGAAAGGGTGGTCTTGGCAGCCACACTTTGTATCAGACGTGCTCCAAGAGCTAGGCCTCAAATCAGCCTTATCTCTAAGCTCCTTGGAGGTGATGCTGATGTAATCAAGTGGGCAAGACTAGAAGTCAATGCTACGGAAGCACCAGAAATGCTTGATGATGAAACTTGTCCACCTTCAATTCTGCAGTCACATCTTAACCTTGCATTGCTTGATGTGGAGGATGACTTGCTCTCCATGTGCAGTGTTGACCAACATGTCTCATTGGAGGACTACCTGAGAGGCAGGTGGAGCCGTTCTTCAAGCTTTGATTAA 2229 0.4392 MKMQQFATAGEPSHGGSDARTVVVGVKMDSHSRELLTWALFKLAQPGDVVLALHVLGNDEIVNREGKSSLFSLVKAFESVLAVYEGFCDLKQVDLKLKICRGSSVKKILVREADACSATHILVGTPHGLSRIRPCISVAKYCAKKLPKDCWVLAVNNGKVVFKRDGSPATRADIKGLNHQDHKNGLLGTLSKSSQVLDVDGTVMNGKGGGQFSDHSLAKAFLDSKEFKGKKGCFICASTPALFDSTCKNSEEESCGEVEEKNPLAIVPVQTNGAASKAGWPLLHRKIVSDGKCPERSVLRQISVVQWAMQLPSRNISYTAHHDHKTYHFDRDKDRFSGLDSNCGALVPVNAEIGTVSLPEHNSRSIPKELVGLHEKYSSTCTLFKYQELVSATSNFLPENLIGKGGSSEVYRGCLPDGKQLAVKILKPSEEVLKEFVLEIEIITTLHHKNIISLLGFCFEDGNLLLVYDFLSRGSLEENLYGNKKIPLVFGWTERYKVAMGVAEALEYLHDNEGQSVIHRDVKSSNVLLSEDFEPQLSDFGLAKWASTSSSHIICTDVAGTFGYMAPEYFMYGKVTEKIDVYAFGVVLLELLSGRKPISGDYPKGQESLVMWASPILNSGKASQLLDPSLGDNYDHEEMERVVLAATLCIRRAPRARPQISLISKLLGGDADVIKWARLEVNATEAPEMLDDETCPPSILQSHLNLALLDVEDDLLSMCSVDQHVSLEDYLRGRWSRSSSFD 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00912 742 SUPERFAMILY Protein kinase-like (PK-like) 377 664 IPR011009 -
Cca05g00912 742 Gene3D HUPs 19 156 IPR014729 -
Cca05g00912 742 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 12 736 - -
Cca05g00912 742 Pfam Protein kinase domain 400 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00912 742 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 20 152 - -
Cca05g00912 742 PANTHER OS01G0253100 PROTEIN 12 736 IPR045271 GO:0004714|GO:0006468
Cca05g00912 742 SMART serkin_6 396 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00912 742 ProSitePatterns Serine/Threonine protein kinases active-site signature. 517 529 IPR008271 GO:0004672|GO:0006468
Cca05g00912 742 ProSitePatterns Protein kinases ATP-binding region signature. 402 424 IPR017441 GO:0005524
Cca05g00912 742 ProSiteProfiles Protein kinase domain profile. 396 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00912 742 Pfam Universal stress protein family 20 152 IPR006016 -
Cca05g00912 742 Gene3D Phosphorylase Kinase; domain 1 361 470 - -
Cca05g00912 742 Gene3D Transferase(Phosphotransferase) domain 1 471 676 - -
Cca05g00912 742 CDD USP_Like 21 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00912 Cca-Chr5 24528969 24533080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00912 383 663 Trihelix Transcription Factor Family AT1G68690 46.154 4.32e-76 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Cca05g00912 Pkinase 9.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00912 - - aprc:113846853 1218.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00912 05 24528969 24533080 Cca05g00912 05 24528969 24533080 ECH
Cca05g00912 05 24528969 24533080 Cca03g00193 03 2881600 2885563 PCT