Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00905 ATGGAAATTGATGGTGGAAACAATGTTACTGAAGGTGACATAGTTTGGATCTTGAAGAACAAAGTTATAAATAGAGGGGTGGCAATTGCTTATCGGAATGGTGTTGCCGAAAATGGAGAGGTTGCAAGCTTGAAGACTGAAGCTGAAAATATTTGGGTTGCAATTGTTGATGGAAATGGTGTCGCTGAAGGTGGAGAAGTTTGGGGCTTGAAGAATGAAGCTGCAAGTAATGAGGTGGTACTTACTGACGGGAATGGTGTTGCCTACGGTGGAGAGGTTCAAGGCTCAAAAAAAGTAGTAAATAATGAGGTGATAATTGCAGATGAGAATGGTGTTGCTGAAGGTGAAGAGGATCACTGCTTGAAGAAAGGAACTATATATAATGTGGTGGCAATTGCAGATGGGTTTGGTGTTGTTCAAGGAGACTCTGGTCCAGCTGAATGTCTTAGAACAGCTAAGAGGCGCAAGCAGGAAACTTTTAAAGTTGACAAGGATGGTCAAGAATCCTCTTCACAATTAGAATGTTTGTTTTATAGATTACAGAGTGAAGGTAATGGACATGCAAATGTTGTGAATAATGGATTTTCTAGTGAGTTAGATGGCAGTGGTGCAACTAAGAGTGTGATAAACTCAAGGATGAAAGGGCAAGCTTATGAACAATCGCCTGCACTTTTCTTATCAGATGTTCAACAGGTTTGGCGAAAGCTTCAAAATACTGGAAATCAGATTGTTGCTATAACCAAGACCCTCTCCAACATGTCAAAAGCTTCCTTCTATGAGCAGGTGGGAATTTCAGTGAAGAGCTCCTTTGAAGATGAAAAACAAGTGCTCAGTAACCAGGAATCCATCTCCCACATGAAACCAGAGCAGGCAGTAGAATGTGTTATGTACAAAGCTGGCACTTGCGGGCATTGTGGAGACAAAGCAGATGGGACAGACTGTTTGGTTTGTGATTCATGTGAGGAGATGTATCATCTGTCCTGTATTGAGCCTGCTGTGAAAGAAATACCCCGGAAAAGCTGGTTCTGTGCCACTTGTGCTGCTAGTGGAATTGGATGTTGGCATGAGAATTGTGTGGTGTGTGAACTGTTGAATGTCCCAAAGACCCTAGGTGACATTGTTGGCAAGGAAAGCATCCCTACAAATGAGGAAACACTGTATGAATTGGAAGAGAATTCAAATTGTACTTATGATGGTGTTCAAGTTTCCAAAGGTGGGAGAAACTTGTATGACTGCAAAATTTGTAAAATGGTGGTGGATGATGAAAAAATGAAAATCTGTGGTCACTCGTTTTGCCCCACTAAATACTACCATGTAAGGTGTTTGTCAATTAAGCAGCTTAAGTCATATGGTCGCTGTTGGTATTGCCCTTCATGCATATGCCAAGTTTGCTTCACTGACAAAGATGATGATAAGGTTGTACTCTGTGATGGCTGTGATCATGCATACCATATCTACTGTATGAAACCTTCACGAAAATCTATTCCAAGAGGGAAATGGTTCTGCTTGAAATGTGATGCAGGGATGGAAGCAATTCGCCAGGCAAGGAAGGCATATGAGAGCAACATAGGGAAAGTTGGTCAGAATGATTCAAAGCCAAATGAAAATATTGACAAGAGATGGAACAAAAAGCGAGGAAGGGAATCAGACAAAGTTGGAGGAATGGACATGCTTATAACTGCAGCAAATACTCTGAATTCTGAAGAGGACATAAATGCAATCATGATTGACTCAAAGAGAACAATAACATGA 1752 0.4115 MEIDGGNNVTEGDIVWILKNKVINRGVAIAYRNGVAENGEVASLKTEAENIWVAIVDGNGVAEGGEVWGLKNEAASNEVVLTDGNGVAYGGEVQGSKKVVNNEVIIADENGVAEGEEDHCLKKGTIYNVVAIADGFGVVQGDSGPAECLRTAKRRKQETFKVDKDGQESSSQLECLFYRLQSEGNGHANVVNNGFSSELDGSGATKSVINSRMKGQAYEQSPALFLSDVQQVWRKLQNTGNQIVAITKTLSNMSKASFYEQVGISVKSSFEDEKQVLSNQESISHMKPEQAVECVMYKAGTCGHCGDKADGTDCLVCDSCEEMYHLSCIEPAVKEIPRKSWFCATCAASGIGCWHENCVVCELLNVPKTLGDIVGKESIPTNEETLYELEENSNCTYDGVQVSKGGRNLYDCKICKMVVDDEKMKICGHSFCPTKYYHVRCLSIKQLKSYGRCWYCPSCICQVCFTDKDDDKVVLCDGCDHAYHIYCMKPSRKSIPRGKWFCLKCDAGMEAIRQARKAYESNIGKVGQNDSKPNENIDKRWNKKRGRESDKVGGMDMLITAANTLNSEEDINAIMIDSKRTIT 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00905 583 MobiDBLite consensus disorder prediction 532 549 - -
Cca05g00905 583 Pfam PHD-finger 302 347 IPR019787 -
Cca05g00905 583 Pfam PHD-finger 460 506 IPR019787 -
Cca05g00905 583 PANTHER D4, ISOFORM A 203 569 - -
Cca05g00905 583 ProSiteProfiles Zinc finger PHD-type profile. 458 508 IPR019787 -
Cca05g00905 583 SUPERFAMILY FYVE/PHD zinc finger 408 460 IPR011011 -
Cca05g00905 583 PANTHER HISTONE ACETYLTRANSFERASE 203 569 - -
Cca05g00905 583 SMART PHD_3 463 506 IPR001965 -
Cca05g00905 583 SMART PHD_3 411 460 IPR001965 -
Cca05g00905 583 SMART PHD_3 301 347 IPR001965 -
Cca05g00905 583 SUPERFAMILY FYVE/PHD zinc finger 460 514 IPR011011 -
Cca05g00905 583 SUPERFAMILY FYVE/PHD zinc finger 296 347 IPR011011 -
Cca05g00905 583 Gene3D - 214 349 - -
Cca05g00905 583 ProSitePatterns Zinc finger PHD-type signature. 302 346 IPR019786 -
Cca05g00905 583 ProSiteProfiles Zinc finger PHD-type profile. 299 349 IPR019787 -
Cca05g00905 583 MobiDBLite consensus disorder prediction 523 549 - -
Cca05g00905 583 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 404 512 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00905 Cca-Chr5 24343946 24381122 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00905 402 521 C2H2 Transcription Factor Family AT3G01460 34.109 2.76e-13 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Cca05g00905 PHD 7.9e-12 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00905 - - gmx:100810450 776.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00905 05 24343946 24381122 Cca05g00905 05 24343946 24381122 ECH
Cca05g00905 05 24343946 24381122 Cca03g01079 03 26343416 26351781 PCT