Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00903 ATGCCTTCCTATGATGAGAGAAAAGAAGAGCACGTGAAAAAGATCGAAGCTTGTGTGGATCTGAAGGTGATGATCGAGGAGCTTGACTCAAACTCAATCGATGTCCCTTCTGTGTTCATCTGCCCAATCTCCCTTGAACCTATGCAAGACCCCGTGACCCTTTGCACAGGCCAAACCTACGACAGATCCAACATCCTCAAATGGCTCTCCCTCGGCCACAAAACATGTCCCACAACAATGCAAGAGCTTTGGGACGACTCCCTCACTCCCAACACCACCCTCTCCCACTTGATCCTCACATGGTTCTCTCACAAACACATGGCCATGAAGAAGAAGCTCGAGGACGTGCAAGGGAGGGTCTTGCACCTCTTGGACACGCTCAAGAGAGTGAAGGGCCAAGCCAGGGTCAGAGCACTTCAGGATCTGAGGCACCTCGTTGGCTCTCATTCCAATGCAAGGAAAGCACTTGAGGAGAATGGTGGGGTTGCCTTGGTTTTCTCCTTGTTGGGTCCTTTCACTTCGCATGCTGTTGGGTCTGAAGCGGTTGGGATCATTGTGGGCTTGGATTTGAGCTATGATCAGTTGAAGGGTAGTCTCATGCATCCTGCTAAGGTGTCACTTTTGGTTGATATTATGAATGAGGGAACTATTGAGACAAAGATGAACTGTGCCAAGTTGATTGAGATGTTGTTGGTGGAAGGGAACAATGAAGTTCTCCAAAGTTTGAGTCTTTTGGTGGGGTTGTTGAGATTGGTGAGGGATAAGAAGCACCCAACTGGGGTTGTCTCAACTGGTCTTGTTCTTCTCAAGGCTATAGTGTGTTCCCATGAGTCAGTTAGAATCTCAGTGATAAGCCTAGGGGGAATTCCCTTATTGATTGAGCTTTTGCCTAGTTTGAACAATGAGTGTTTGGAGGTGGCATTGTACATTCTAGAGGTTCTGTCAACACTTGAGGAGGGGAGAATGGCACTTAAGGAATGTCCAAATGTTGTTCCCAATGTGGTCAAGTATTTGATGAGAGTCTCAGAGAGGTGCACTCAGTTTGCATTGTCAATTTTGTGGGCTATCTACAAGCTTGCACCTGAAGAGTGTGCCTCACAGGCTGTGGAGGCTGGCTTGGCTGCAAAGCTTCTGCTGGTGATTCAGAGTGGATGCAACCCTGTGTTGAAACAAATGTCTTCTGAGTTTTTGAAATTGTGCAGTTTGAATTACTCTACTAGCATCTTGATCTCCAAGTGTATGCTTACCTCAACAATACAGTGA 1263 0.4703 MPSYDERKEEHVKKIEACVDLKVMIEELDSNSIDVPSVFICPISLEPMQDPVTLCTGQTYDRSNILKWLSLGHKTCPTTMQELWDDSLTPNTTLSHLILTWFSHKHMAMKKKLEDVQGRVLHLLDTLKRVKGQARVRALQDLRHLVGSHSNARKALEENGGVALVFSLLGPFTSHAVGSEAVGIIVGLDLSYDQLKGSLMHPAKVSLLVDIMNEGTIETKMNCAKLIEMLLVEGNNEVLQSLSLLVGLLRLVRDKKHPTGVVSTGLVLLKAIVCSHESVRISVISLGGIPLLIELLPSLNNECLEVALYILEVLSTLEEGRMALKECPNVVPNVVKYLMRVSERCTQFALSILWAIYKLAPEECASQAVEAGLAAKLLLVIQSGCNPVLKQMSSEFLKLCSLNYSTSILISKCMLTSTIQ 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00903 420 PANTHER WDSAM1 PROTEIN 14 419 IPR045185 GO:0061630
Cca05g00903 420 SUPERFAMILY RING/U-box 23 107 - -
Cca05g00903 420 Pfam U-box domain 35 105 IPR003613 GO:0004842|GO:0016567
Cca05g00903 420 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 14 419 - -
Cca05g00903 420 SMART Ubox_2 38 101 IPR003613 GO:0004842|GO:0016567
Cca05g00903 420 CDD RING-Ubox_PUB 39 81 IPR045210 -
Cca05g00903 420 SUPERFAMILY ARM repeat 122 402 IPR016024 -
Cca05g00903 420 Gene3D - 117 252 IPR011989 -
Cca05g00903 420 ProSiteProfiles U-box domain profile. 34 108 IPR003613 GO:0004842|GO:0016567
Cca05g00903 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 116 IPR013083 -
Cca05g00903 420 Gene3D - 253 400 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00903 Cca-Chr5 24289556 24291284 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00903 19 420 U-box Gene Family AT3G49810 62.376 1.05e-174 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00903 - - gmx:100803878 669.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00903 05 24289556 24291284 Cca05g00903 05 24289556 24291284 ECH