Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00888 ATGTCTTGTGCTGATGGCAAAATTCTTGAAGGTATTCATGTTGAACCTGAAATGTCTTGTACTGATAAGAGCTCTGAAGACACTCATGACGTCTCTATAATGTCTTTTGTTGATAATGCCATTGAAGACACCCATGTTGTATCTGAGAAGGTCCTCAAATATTCCTATGTTGTCCTTGAAAAAAGAATTAATGAGGTGGAAAAGATGGCCAAGAATGAAAGGCAAATGGAAAGCCAATTCCATAGCAAAAGGAAGATTATGAACCCTGAGATGATTAGGAGAAGAAAGATTTTTGTTGGGGGCTTACCTTCTGGCATATCTGAGGAGAAATTTAAGGAGTATTTTGAGAGGTTTGGCACAATAACCGATGTGGCTGTGATGCGAGATAGTGTCACAAATCGACCAAGAGGATTTGGGTTCATCACATTTGGTTCTGAAAAGTCAGTTAATGATGTTATGGTGAATAGCTTCTATGACCTAAATGGTAAACAAGTGGAGGTGAAAAGGGTGATGCCAAAAGTGGAGAATCGTGATCGTGGTGTTTTTGATCAATTGAAATACAACAATGGAAATGGAACATCATGGGAAGGTTTTCCTTATTATGGTAATAATATGATTCCAAGTCCTGCTTATGGTTCTCATCCTTGGTACAATAACAATGCTTATGGTTCTCATCCTTGGTACAATAACAATGCTTATGGTTCTCATCCTTGGTACAATAATAATGGGTTATATGCTAATGCACCAAACCCTTATGATTGGTACCCTATGCTTGGTGCTTCTCTTCCTCGGTACATGCCCATGGCACCCATGGCTCAACCATGTCCTGACCCTTTTGGTTATTGTTTCCCAAGTTATCCATATGTTGGTGGGAATGTTGGGGTGAACAATAAGCCAACACAGAATAATCATAGAGAGTAA 921 0.392 MSCADGKILEGIHVEPEMSCTDKSSEDTHDVSIMSFVDNAIEDTHVVSEKVLKYSYVVLEKRINEVEKMAKNERQMESQFHSKRKIMNPEMIRRRKIFVGGLPSGISEEKFKEYFERFGTITDVAVMRDSVTNRPRGFGFITFGSEKSVNDVMVNSFYDLNGKQVEVKRVMPKVENRDRGVFDQLKYNNGNGTSWEGFPYYGNNMIPSPAYGSHPWYNNNAYGSHPWYNNNAYGSHPWYNNNGLYANAPNPYDWYPMLGASLPRYMPMAPMAQPCPDPFGYCFPSYPYVGGNVGVNNKPTQNNHRE 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00888 306 Gene3D - 57 184 IPR012677 -
Cca05g00888 306 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 172 IPR000504 GO:0003723
Cca05g00888 306 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 48 296 - -
Cca05g00888 306 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 48 296 - -
Cca05g00888 306 Coils Coil 56 76 - -
Cca05g00888 306 SUPERFAMILY RNA-binding domain, RBD 87 179 IPR035979 GO:0003676
Cca05g00888 306 SMART rrm1_1 96 168 IPR000504 GO:0003723
Cca05g00888 306 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 155 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00888 Cca-Chr5 24010856 24012512 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00888 63 250 Eukaryotic Initiation Factors Gene Family AT2G36660 26.238 5.95e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00888 K14411 - gmx:102670015 289.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00888 05 24010856 24012512 Cca05g00888 05 24010856 24012512 ECH