Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00885 atgaaggagAGAGATAAGAGAGAGGGGAGTCCTGTTGAGATTGATATTTCCTTTGAGTCCAATTCGCTTGTAGCGAAGGCAATTGTGGCTCCGCCAACACCGCCACCACCCTTgagttcggtttctgttcctgatttgaatgtgactccgattttggattcagatttcgattATGGGGAGAGGAGTAAAAGGGTATCGAATGGTGATTATTCTGGTTTGCAACCGGTTAGGGTGTCTTCAGTTATTATGGATTTGAATAGGTCGCCTTTCAAGGGGAATGATAGTTCTATTTCAGGGAAGAAGGAGGCTCTAGATATGTGCCAACTTGGAGATGAAGTAAGGAAACAAGAAGGGAAGCTTGATTCCAAAGTTACTGAGAATGGAGAAAATTGGAGTATGGGTCAAAGGCAATTGGTCTGCCTTGGTCGTGTTCTACTCAAGAAAAGAAAGATCTTGGTGCTTGATGAAGCTACTGCATCGGTTGATACAGCCACAGATAATATTATTCAGCAAACTGTTAAGCAACATTTTTCAGAATGCACAGTCATTACCATTGCTCATAGGATATTGGCACATATCTAG 582 0.3763 MKERDKREGSPVEIDISFESNSLVAKAIVAPPTPPPPLSSVSVPDLNVTPILDSDFDYGERSKRVSNGDYSGLQPVRVSSVIMDLNRSPFKGNDSSISGKKEALDMCQLGDEVRKQEGKLDSKVTENGENWSMGQRQLVCLGRVLLKKRKILVLDEATASVDTATDNIIQQTVKQHFSECTVITIAHRILAHI 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00885 193 Pfam ABC transporter 117 159 IPR003439 GO:0005524
Cca05g00885 193 Gene3D - 76 192 IPR027417 -
Cca05g00885 193 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 102 190 - -
Cca05g00885 193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 189 IPR027417 -
Cca05g00885 193 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 102 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00885 Cca-Chr5 23901472 23902860 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00885 120 189 Calmodulin-binding Proteins AT2G36910 35.714 6.31e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00885 - K05666 gmx:100795627 162.155