Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00883 ATGATCCTACCCTTAACAGCCCACAAGTACCGGCGAAGCCCCAAAACCCATCACCACCTAAGCCCCATTTCCGGCAAAGACGGCTCCGATGGCTCGTCGTTCTCTGGTGCGGTGTTTAACCTCTCAACGACCGTTGTCGGCGCCGGCATCATGGCTCTTCCGGCCGCCGTCAAGCAGCTGGGGCTAATTCCGGGTCTAGTCATGATTATACTATGTGCCATGTTAACCGAATCGTCCATCACCATGCTCGTGCGGTTCACACGTGCGTCCAAGTCCTCCACCTATTCCGGTGTTGTCCGTGACGCGTTCGGTGGCCTTGGTCGGAACCTCTTGTTGCTTTGCATCATCGTAAACAACGTGGGCATGCTCGTTGTCTACATGGTCATTATCGGTGATGTGTTCTCAGGAACGTGGTCAGAAGGAGTGCACTATTCAGGGGTTCTAGAAGAATGGTTTGGTCAACGTTGGTGGTCAACGCGCCCTATCTTATTGTTGCTCACAACATTTCTGGTATTGCTGCCTCTCGCATCATTCAGGCGTGTGGATTCACTGAGATACACTTCAGCATTGTCAGTGGGGTTGGCCATTGTATTTGTGGTGATAACAGCAAGCATAGCAGTTGTTAAGTTCATCGATGGAAGCATCGGAATGCCACGCTTAATGGCAAAATTCACTGGCTTGGAGTCCTTTTGGAAGCTTTTCACAGCTATCCCTATATTAGTCTCTGCTTACATCTGTCATCATAATGTTCACCCTATAGAGAATGAACTCAAAGATCCTTCCCAAATGAAGGCAATAGTGAGGACATCACTCATACTATGCTCATCTGTGTACGTAGCAACCAGCCTTTTTGGTTTCTTCTTATTTGGAGACAAGACACTGGATGATGTACTAGCCAACTTTGATGGAGATCTTGGAGTCCCTTATGGATCATTTCTTACTGATATAGTTAGAGTGAGCTATGGCATTCACCTTATCCTTGTGTTCCCTATTGTGTTTTACTCCCTTCGCCTCAACCTAGATGTTCTTTTGTTTCCACATGCCATTCCTCTTGCCTTTGACACTAGGAGATTCTACTTGGTCACCACACTTCTCATGGCTTTCATTTTTGTTGGAGCCATTTTTGTTCCCAGCATCTGGGATGCCTTCCAATTCATTGGTGCCACAGCTGCTGTTTCTGCTGGATACATTTTTCCAGCTGCTATTGCTCTTAGGGATACTCGTGGGGTTGCAACAAAGAAAGACAAGTTATTATCTTGGTTTATGATATTTTTGGCTGTCTCATGTAGCACTGTAGCCATCTTTAGTGACTTGTATACTGTCTACAGTAATGAACAAGTAGATGAAAAATTGATTTGA 1359 0.4606 MILPLTAHKYRRSPKTHHHLSPISGKDGSDGSSFSGAVFNLSTTVVGAGIMALPAAVKQLGLIPGLVMIILCAMLTESSITMLVRFTRASKSSTYSGVVRDAFGGLGRNLLLLCIIVNNVGMLVVYMVIIGDVFSGTWSEGVHYSGVLEEWFGQRWWSTRPILLLLTTFLVLLPLASFRRVDSLRYTSALSVGLAIVFVVITASIAVVKFIDGSIGMPRLMAKFTGLESFWKLFTAIPILVSAYICHHNVHPIENELKDPSQMKAIVRTSLILCSSVYVATSLFGFFLFGDKTLDDVLANFDGDLGVPYGSFLTDIVRVSYGIHLILVFPIVFYSLRLNLDVLLFPHAIPLAFDTRRFYLVTTLLMAFIFVGAIFVPSIWDAFQFIGATAAVSAGYIFPAAIALRDTRGVATKKDKLLSWFMIFLAVSCSTVAIFSDLYTVYSNEQVDEKLI 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00883 452 PANTHER AMINO ACID TRANSPORTER AVT6A 24 445 - -
Cca05g00883 452 Pfam Transmembrane amino acid transporter protein 31 434 IPR013057 -
Cca05g00883 452 PANTHER AMINO ACID TRANSPORTER 24 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00883 Cca-Chr5 23882360 23886957 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00883 26 449 Amino Acid or Auxin Permease AAAP Family AT3G30390 57.075 1.21e-178 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00883 K14207 - gmx:100814034 768.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00883 05 23882360 23886957 Cca05g00883 05 23882360 23886957 ECH