Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00873 ATGAGTTTTCATAACACAggacttggacttggtcttggccttggtcttgTTGGCTTCCATGATCATCAATCAGAGAATTCCATAGAAAGCCACAAGAAAAAGGTGGAAAATCCATCAAAATGTAACAAAGAATATCCATCACTTACATTAGGACCACCAGATGATGATGAAGTGAATAATCAACCAAGTTCAAAGACCGAGTCCTATGAATATTTTCGACCACAAGTTTCTTCCCCCAGCGCAGTGTCTTCATTTTCCAACTCTTCTAGTATCAAGAGGGAGCGAGATCAGGCCTTGGGAGAAGAATTTGAGGTTGAAGTTGAGAAAGTTCCAACAAGGGTTGCTGATGTTGATGAAGATGGTAACCCCAGAAAGAAACTTAGGCTCACCAAAGAACAATCTGCAATCTTGGAAGAAAACTTCAGAGAGCATTCTACTCTTAATCCGAAGCAAAAGCAAGAATTGGCAGTGAAGCTGAATCTACGGACAAGACAAGTAGAGGTGTGGTTTCAGAATAGAAGAGCCAGGACAAAGCTAAAGCAAACGGAGTCAGATTGTGAACTACTAAAGAAGTGTTGTGATACTCTAACAGATGAGAATAAGAGGCTGCAAAAGGAAGTGCAAGAGCTAAAGTCAATGCAAACAAGGGCAGTGCCCCTTTATATGCAGATTCCCGCAGCCACACTTTCCATTTGCCCTTCTTGTGAGAGAATGTGTAGTGGTAACAACGACAATAATGATAATGATTCTTCACACACAACAACATTATTTATCGGCTCAAATAACCATCATAATCACTTTTACAAAAGTAGCTATCCATTTTCCCACTCATCATCGGCAGCATGCTAG 849 0.3887 MSFHNTGLGLGLGLGLVGFHDHQSENSIESHKKKVENPSKCNKEYPSLTLGPPDDDEVNNQPSSKTESYEYFRPQVSSPSAVSSFSNSSSIKRERDQALGEEFEVEVEKVPTRVADVDEDGNPRKKLRLTKEQSAILEENFREHSTLNPKQKQELAVKLNLRTRQVEVWFQNRRARTKLKQTESDCELLKKCCDTLTDENKRLQKEVQELKSMQTRAVPLYMQIPAATLSICPSCERMCSGNNDNNDNDSSHTTTLFIGSNNHHNHFYKSSYPFSHSSSAAC 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00873 282 CDD homeodomain 123 181 IPR001356 GO:0003677
Cca05g00873 282 MobiDBLite consensus disorder prediction 27 89 - -
Cca05g00873 282 Pfam Homeobox associated leucine zipper 180 213 IPR003106 GO:0006355|GO:0043565
Cca05g00873 282 ProSitePatterns 'Homeobox' domain signature. 155 178 IPR017970 GO:0000981|GO:0006355
Cca05g00873 282 Gene3D - 117 186 - -
Cca05g00873 282 Coils Coil 186 216 - -
Cca05g00873 282 MobiDBLite consensus disorder prediction 54 89 - -
Cca05g00873 282 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 5 280 - -
Cca05g00873 282 SUPERFAMILY Homeodomain-like 120 181 IPR009057 -
Cca05g00873 282 SMART HOX_1 122 184 IPR001356 GO:0003677
Cca05g00873 282 ProSiteProfiles 'Homeobox' domain profile. 120 180 IPR001356 GO:0003677
Cca05g00873 282 Pfam Homeodomain 124 178 IPR001356 GO:0003677
Cca05g00873 282 SMART halz 180 224 IPR003106 GO:0006355|GO:0043565
Cca05g00873 282 PANTHER - 5 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00873 Cca-Chr5 23634902 23637386 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00873 91 238 Homeobox Transcription Factor Family AT4G37790 65.161 3.58e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Cca05g00873 Homeodomain 5.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00873 K09338 - gmx:100807072 395.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00873 05 23634902 23637386 Cca05g00873 05 23634902 23637386 ECH