Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00868 ATGGGTATATGCATATCCATTACATCTTTAGAGATTCATGATGAGGATGTGACAATATTTGAAGCAAGAAAGGTCCTAAATGGGAGTCAGAGTCTATGCTCTGTTTACTCCAGAAAGGGTACCAAAGGAATCAACCAAGATGCTGCCTCTATTCATGAGGGTTATGGGATGGAAGATGGAGCATTTTGTGGCGTCTATGATGGGCATGGAAGGTATGGACACATAGTGAGCAAAATAGTAAACAGTCGTTTGTCTTCACTCATATTGGATCAAAAGAAAGTTGTTGACAAGATTGGTGCGATAGAAAATGGTAATAACACCTCCCCAAAATACCATGTTGACACAGAGAGTTTTCACAAATGGAAAGAAGCAATTGTGAGTGCTTTCAAGGTGATGGACAAGGAGGTGAAGCTTCAACAGAATGTAGACTCTTGCAGTGGAACCACTGCTGTAGTCATCATAAAACAGGGTGAAGGTCTTGTCATAGCTAATCTTGGTGATTCAAGAGCAGTTTTGGGAACAATCTATGATGAAAAACTCATAGCCATTCAATTGACCACAGATTTGAAGCCAGGATTACCTCGAGAAGCAGAAAGAATAAGGAGGAACAATGGTTGTGTGTATGCGTTGAAGGAAGAACCTCATATCCAACGAGTGTGGATTCCCAACAATGAGAACTCCCCTGGCCTAGCCATGTCTCGAGCTTTTGGAGATTTTCTACTCAAAGATCACGGTCTCACTGCCATCCCAGATATTTCCTATCATTCCCTAACATCAAGTGACCAATTTGTTGTTCTTGCAAGTGATGGGGTGTGGGATGTGCTAAGTAACAGTGAGGTTGCATCAATTGTGTGGAGTGTAGAGAGTGAAGAGGCAGCAGCAAGGGCAGTGGTGGAAGCAGCCAATGCTGCGTGGCAAAAGAAGTATCCTTCCTCTATGGTGGATGAGTGCACAGTGGCTTGTCTCTTCCTTCAGAAGAAACCACAACTTCGGGCATATGAAAACTGA 1008 0.4306 MGICISITSLEIHDEDVTIFEARKVLNGSQSLCSVYSRKGTKGINQDAASIHEGYGMEDGAFCGVYDGHGRYGHIVSKIVNSRLSSLILDQKKVVDKIGAIENGNNTSPKYHVDTESFHKWKEAIVSAFKVMDKEVKLQQNVDSCSGTTAVVIIKQGEGLVIANLGDSRAVLGTIYDEKLIAIQLTTDLKPGLPREAERIRRNNGCVYALKEEPHIQRVWIPNNENSPGLAMSRAFGDFLLKDHGLTAIPDISYHSLTSSDQFVVLASDGVWDVLSNSEVASIVWSVESEEAAARAVVEAANAAWQKKYPSSMVDECTVACLFLQKKPQLRAYEN 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00868 335 SMART PP2C_4 19 322 IPR001932 -
Cca05g00868 335 ProSiteProfiles PPM-type phosphatase domain profile. 32 324 IPR001932 -
Cca05g00868 335 PANTHER PROTEIN PHOSPHATASE 2C 72-RELATED 1 329 - -
Cca05g00868 335 CDD PP2Cc 33 286 IPR001932 -
Cca05g00868 335 Gene3D - 16 327 IPR036457 -
Cca05g00868 335 PANTHER ALPHABET, ISOFORM E-RELATED 1 329 - -
Cca05g00868 335 SUPERFAMILY PP2C-like 27 325 IPR036457 -
Cca05g00868 335 Pfam Protein phosphatase 2C 93 301 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00868 Cca-Chr5 23530312 23532958 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00868 22 325 PP2C-type Phosphatase Gene Family AT1G16220 47.546 3.82e-97 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00868 - - gmx:100815312 483.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00868 05 23530312 23532958 Cca05g00868 05 23530312 23532958 ECH
Cca03g01390 03 32158497 32159298 Cca05g00868 05 23530312 23532958 ECH