Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00866 ATGGGTATATGCATATCCATTACATCTTTAGAGATTCATGATGAGGATGTGACAATATTTGAAGCAAGAAAGGTCCTAAATGGGAGTCAGAGTCTATGCTCTGTTTACTCCAGAAAGGGTACCAAAGGAATCAACCAAGATGCTGCCTCTATTCATGAGGGTTATGGGATGGAAGATGGAGCATTTTGTGGCGTCTATGATGGGCATGGAAGGTATGGACACATAGTGAGCAAAATAGTAAACAGTCGTTTGTCTTCACTCATATTGGATCAAAAGAAAGTTGTTGACAAGATTGGTGCGATAGAAAATGGTAATAACACCTCCCCAAAATACCATGTTGACACAGAGAGTTTTCACAAATGGAAAGAAGCAATTGTGAGTGCTTTCAAGGTGATGGACAAGGAGGTGAAGCTTCAACAGAATGTAGACTCTTGCAGTGGAACCACTGCTGTAGTCATCATAAAACAGGGTGAAGGTCTTGTCATAGCTAATCTTGGTGATTCAAGAGCAGTTTTGGGAACAATCTATGATGAAAAACTCATAGCCATTCAATTGACCACAGATTTGAAGCCAGGATTACCTCGAGAAGCAGAAAGAATAAGGAGGAACAATGGTTGTGTGTATGCGTTGAAGGAAGAACCTCATATCCAACGAGTGTGGATTCCCAACAATGAGAACTCCCCTGGCCTAGCCATGTCTCGAGCTTTTGGAGATTTTCTACTCAAAGATCACGGTCTCACTGCCATCCCAGATATTTCCTATCATTCCCTAACATCAAGTGACCAATTTGTTGTTCTTGCAAGTGATGGGGTGTGGGATGTGCTAAGTAACAGTGAGGTTGCATCAATTGTGTGGAGTGTAGAGAGTGAAGAGGCAGCAGCAAGGGCAGTGGTGGAAGCAGCCAATGCTGCGTGGCAAAAGAAGTATCCTTCCTCTATGGTGGATGACTGCACAGTGGCTTGTCTCTTCCTTCAGAAGAAACCACAACTTCGGGCATATGAAAACTGA 1008 0.4306 MGICISITSLEIHDEDVTIFEARKVLNGSQSLCSVYSRKGTKGINQDAASIHEGYGMEDGAFCGVYDGHGRYGHIVSKIVNSRLSSLILDQKKVVDKIGAIENGNNTSPKYHVDTESFHKWKEAIVSAFKVMDKEVKLQQNVDSCSGTTAVVIIKQGEGLVIANLGDSRAVLGTIYDEKLIAIQLTTDLKPGLPREAERIRRNNGCVYALKEEPHIQRVWIPNNENSPGLAMSRAFGDFLLKDHGLTAIPDISYHSLTSSDQFVVLASDGVWDVLSNSEVASIVWSVESEEAAARAVVEAANAAWQKKYPSSMVDDCTVACLFLQKKPQLRAYEN 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00866 335 Gene3D - 16 327 IPR036457 -
Cca05g00866 335 SUPERFAMILY PP2C-like 27 325 IPR036457 -
Cca05g00866 335 CDD PP2Cc 33 286 IPR001932 -
Cca05g00866 335 PANTHER ALPHABET, ISOFORM E-RELATED 1 329 - -
Cca05g00866 335 ProSiteProfiles PPM-type phosphatase domain profile. 32 324 IPR001932 -
Cca05g00866 335 PANTHER PROTEIN PHOSPHATASE 2C 72-RELATED 1 329 - -
Cca05g00866 335 Pfam Protein phosphatase 2C 93 301 IPR001932 -
Cca05g00866 335 SMART PP2C_4 19 322 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00866 Cca-Chr5 23514227 23516873 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00866 22 325 PP2C-type Phosphatase Gene Family AT1G16220 47.853 8.88e-98 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00866 - - gmx:100815312 484.952