Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00856 ATGGGTATATGCATATCCATTACATCTTTAGAGATTCATGATGAGGATGTGACAATATTTGAAGCAAGAAAGGTCCTAAATGGGAGTCAGAGTCTATGCTCTGTTTACTCCAGAAAGGGTACCAAAGGAATCAACCAAGATGCTGCCTCTATTCATGAGGGTTATGGGATGGAAGATGGAGCATTTTGTGGCGTCTATGATGGGCATGGAAGGTATGGACACATAGTGAGCAAAATAGTAAACAGTCGTTTGTCTTCACTCATATTGGATCAAAAGAAAGTTGTTGACAAGATTGGTGCGATAGAAAATGGTAATAACACCTCCCCAAAATACCATGTTGACACAGAGAGTTTTCACAAATGGAAAGAAGCAATTGTGAGTGCTTTCAAGGTGATGGACAAGGAGGTGAAGCTTCAACAGAATGTAGACTCTTGCAGTGGAACCACTGCTGTAGTCATCATAAAACAGGGTGAAGGTCTTGTCATAGCTAATCTTGGTGATTCAAGAGCAGTTTTGGGAACAATCTATGATGAAAAACTCATAGCCATTCAATTGACCACAGATTTGAAGCCAGGATTACCTCATGCAGGAGAAGCAGAAAGAATAAGGAGGAACAATGGTTGTGTGTATGCGTTGAAGGAAGAACCTCATATCCAACGAGTGTGGATTCCCAACAATGAGAACTCCCCTGGCCTAGCCATGTCTCGAGCTTTTGGAGATTTTCTACTCAAAGATCACGGTCTCACTGCCATCCCAGATATTTCCTATCATTCCCTAACATCAAGTGACCAATTTGTTGTTCTTGCAAGTGATGGGGTGTGGGATGTGCTAAGTAACAGTGAGGTTGCATCAATTGTGTGGAGTGTAGAGAGTGAAGAGGCAGCAGCAAGGGCAGTGGTGGAAGCAGCCAATGCTGCGTGGCAAAAGAAGTATCCTTCCTCTATGGTGGATGACTGCACAGTGGCTTGTCTCTTCCTTCAGAAGAAACCACAACTTCGGGCATATGAAAACTGA 1014 0.431 MGICISITSLEIHDEDVTIFEARKVLNGSQSLCSVYSRKGTKGINQDAASIHEGYGMEDGAFCGVYDGHGRYGHIVSKIVNSRLSSLILDQKKVVDKIGAIENGNNTSPKYHVDTESFHKWKEAIVSAFKVMDKEVKLQQNVDSCSGTTAVVIIKQGEGLVIANLGDSRAVLGTIYDEKLIAIQLTTDLKPGLPHAGEAERIRRNNGCVYALKEEPHIQRVWIPNNENSPGLAMSRAFGDFLLKDHGLTAIPDISYHSLTSSDQFVVLASDGVWDVLSNSEVASIVWSVESEEAAARAVVEAANAAWQKKYPSSMVDDCTVACLFLQKKPQLRAYEN 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00856 337 SUPERFAMILY PP2C-like 27 327 IPR036457 -
Cca05g00856 337 CDD PP2Cc 33 288 IPR001932 -
Cca05g00856 337 PANTHER PROTEIN PHOSPHATASE 2C 72-RELATED 1 331 - -
Cca05g00856 337 Pfam Protein phosphatase 2C 93 303 IPR001932 -
Cca05g00856 337 ProSiteProfiles PPM-type phosphatase domain profile. 32 326 IPR001932 -
Cca05g00856 337 Gene3D - 16 329 IPR036457 -
Cca05g00856 337 PANTHER ALPHABET, ISOFORM E-RELATED 1 331 - -
Cca05g00856 337 SMART PP2C_4 19 324 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00856 Cca-Chr5 23323624 23326542 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00856 23 327 PP2C-type Phosphatase Gene Family AT1G16220 47.706 4.50e-96 291
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00856 05 23323624 23326542 Cca05g00856 05 23323624 23326542 ECH
Cca05g00856 05 23323624 23326542 Cca03g01749 03 36592034 36593963 PCT