Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00847 ATGGAGAACAATATGTACAGTGCTCCACTGGACATGGCTGGCCGAATTTCTACTGCCATAGAAGAAATTACACAGCATTTAGCACCAAAGCCACTGGTTCATTGCTATTCATTTGACCTCAATAACCAAAGCCACATTATAGATGGAATTCCAGTACTTGCTGGTGGAGAGCAAGGTGAACCTACAAGTGATGTCCATGTAGATGGTTGCTTCATAAACCCTGCTACCATTGCTGATTCCAATTCATTTATTGCATCACAAGGAAAAACTGTTGTAGGAGATGCCTCAAATCCTATTAACAACAATGACTTTCACGAACATTTAGCTGGAGGAAGGCCAATTACTTCTGCTTCACTAGCTGCTAGAATTAGTCTTCAAGAAAATCTAGAGAATTCTTCAGCAGCTTTGCCTCCTTCATTCTGTTCATTGGAGGCAATAGGACCATATATCTTCAATAATTGGCAGGACACATCAAACCCTTTACATGCAACTTTTGGTGATCATGCCTATGATGAATTACCTGGTATTCATAAGTGGAATGTGAACAAGTTTCTGAAAGCTCCTGAGGTTGATGGGACTGGGATCCTGGCTTATTCAACCATAGGAAATCCAAACCTGGATCAAAATGGATGGACATCGTCAAATGTTGCAAATTTGGCCAATCTTGCTTACAATTCCTCTAATTGTAGTAATGAGCTTTCACTAAGTCTTGCAAGATCTCCAACTACAGGTCAGTGCTCAGAGATGAGCTGCTCTGACGTGTCTAATCGCATGAATGTAACAACAATGTCAGGTTTGGAGCAACCCTCCTGCAGCAGCAAGGATTTGTCTATGAGATTAGATTCTAACAAACATGTCCAGTTTTCACCAGCAATCTTGGGGTCCAGATACCTTGCTGGAATTCAAGAGATACTTACTCAAATTGCAACATATTCATTTGAAAACGTAGAGCTGATGAATTATTCAGTTGCTGGTGTTAGAGCAGGAGGGAATAATAATTCAGCTTCAGCTTTCACACCCAAGAGAAGGGTAGCAATTAACCAAAATGCAAATTCCATGTTTGAAGCACATGTAGAAGAATCTCCGTTGGAAAGACATGCAACTGAATCAAACAAATCCCAACTTCTCGTTCTTCTACAGCTGGTGGACAACCGATACAGTGAGTGTTTGGATGAGATTCATACTGTTGTATCTGCATTCCATGCTGCGACTGAGCTGGATCCACACATCATGCATGCACATTTTGCACTTCAAACGATCACTCTCTTATACAAGGACCTGCGAGAGAGGATTAGCAATCATATTCTTGCCATGGGACCAGATTTTAACAGCTTGTGCTCAGAAGAGGAGAAGGAATGGTGTGTTGAAACTTCATTCATTCAAAAGCAATGGGCTCTCCAGCAGTTGAAAAGAAAAGATCACTTATGGAGGCCCCAAAGGGGCTTGCCAGAAAGATCTGTCTCAGTTCTACGCGCTTGGATGTTTCAGAATTTCCTCCATCCGTATCCTAAAGATGCAGAGAAGCATTTACTTGCAGTAAAAAGTGGGTTGACACGAAGCCAGGTATCCAATTGGTTTATCAATGCGCGGGTTAGGCTATGGAAGCCTATGATTGAAGAAATGTATGCTGAAATGAATAGAAGAAAAGCTTGTCGAAATGAAGAAGGAATGGAGAGCACTCATAGAAGCAGGTTAAGCATGAACAATCAAATGTTGAATATCAATTGA 1728 0.4126 MENNMYSAPLDMAGRISTAIEEITQHLAPKPLVHCYSFDLNNQSHIIDGIPVLAGGEQGEPTSDVHVDGCFINPATIADSNSFIASQGKTVVGDASNPINNNDFHEHLAGGRPITSASLAARISLQENLENSSAALPPSFCSLEAIGPYIFNNWQDTSNPLHATFGDHAYDELPGIHKWNVNKFLKAPEVDGTGILAYSTIGNPNLDQNGWTSSNVANLANLAYNSSNCSNELSLSLARSPTTGQCSEMSCSDVSNRMNVTTMSGLEQPSCSSKDLSMRLDSNKHVQFSPAILGSRYLAGIQEILTQIATYSFENVELMNYSVAGVRAGGNNNSASAFTPKRRVAINQNANSMFEAHVEESPLERHATESNKSQLLVLLQLVDNRYSECLDEIHTVVSAFHAATELDPHIMHAHFALQTITLLYKDLRERISNHILAMGPDFNSLCSEEEKEWCVETSFIQKQWALQQLKRKDHLWRPQRGLPERSVSVLRAWMFQNFLHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYAEMNRRKACRNEEGMESTHRSRLSMNNQMLNIN 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00847 575 Pfam Associated with HOX 292 432 IPR006563 -
Cca05g00847 575 SUPERFAMILY Homeodomain-like 478 545 IPR009057 -
Cca05g00847 575 PANTHER HOMEOBOX PROTEIN ATH1 13 571 - -
Cca05g00847 575 CDD homeodomain 476 537 IPR001356 GO:0003677
Cca05g00847 575 Pfam Homeobox KN domain 493 532 IPR008422 GO:0003677|GO:0006355
Cca05g00847 575 ProSiteProfiles 'Homeobox' domain profile. 473 536 IPR001356 GO:0003677
Cca05g00847 575 Gene3D - 479 558 - -
Cca05g00847 575 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 13 571 - -
Cca05g00847 575 SMART prehox3 286 433 IPR006563 -
Cca05g00847 575 SMART HOX_1 476 540 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00847 Cca-Chr5 23147445 23150156 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00847 231 549 Homeobox Transcription Factor Family AT4G32980 55.140 7.00e-104 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Cca05g00847 POX 3.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00847 - - gmx:100812648 909.057
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00847 05 23147445 23150156 Cca05g00847 05 23147445 23150156 ECH
Cca05g00847 05 23147445 23150156 Cca03g01744 03 36550646 36553021 PCT