Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00844 ATGTTGATAGATCGGAAGGACAACGTCTTTATCATTTCTAACTTTAAATCCAAGTATCCGGTGCTCCAGCTAGATTTACGATTGATTTCAGACCTGGTAGTTGCTATTGTTTCGGCTACGTGTGGTGGCGTTGCATTTGCTTTTGCTGGACAGCCGGTCATTACAGGATATCTTCTAGCTGGCTCCATAGTTGGACCTGGTGGCTTTAACTTCATCAGTGAAATGGTGCAGGTGGAAACAGTGGCACAATTTGGTGTAATATTTCTCCTGTTTGCATTGGGCCTGGAGTTCTCCACAACAAAGCTTCGAGTAGTTCGAGCTGTTGCTATTCTTGGAGGCCTACTTCAGATTTTTCTATTTATGTGCATGTGTGGACTTACTGTATCGCTATGTGGTGGTAAAGCTTCAGAAGGGGTTTTTGTTGGCGCTTTCCTTTCCATGTCTTCAACAGCAGTGGTCTTGAAGTTTTTGATGGAAAAGAACACCACTAATGCCCTTCATGGTCAAGTCACAATAGGGACCCTTATTTTGCAGGATTGTGCTGTTGGATTGCTCTTTGCATTGCTGCCAGTTCTGGGTGGCACCTCAGGTGTTTTTCAAGGAGTGTTGTCAATGACCAAGCTGTTGGTGACATTGATTGCATTCCTCTCTGTTCTGTCAATATTGTCTCGCACTTGCCTTCCGTGGTTGCTTAAACTGATGATAAGCCTCTCATCACAGACAAATGAACTCTATCAATTGGCGTCAGTTGCATTCTGCTTGATAGTAGCCTGGTGTAGTGATAAGCTGGGACTAAGTCTAGAACTAGGTTCCTTTGCTGCTGGAGTGATGATTGCAACCACTGATCTGGCTCAACATACACTAGAGCAAGTAAGACTACATAAAAAATCTGGAAAATACTTGTGTGAATATATCGATACTAGTATCAATTGTCTGCTGACATGCATTGATGTtgttagatgttctacacagctagaaatatggataaagtag 993 0.4139 MLIDRKDNVFIISNFKSKYPVLQLDLRLISDLVVAIVSATCGGVAFAFAGQPVITGYLLAGSIVGPGGFNFISEMVQVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAILGGLLQIFLFMCMCGLTVSLCGGKASEGVFVGAFLSMSSTAVVLKFLMEKNTTNALHGQVTIGTLILQDCAVGLLFALLPVLGGTSGVFQGVLSMTKLLVTLIAFLSVLSILSRTCLPWLLKLMISLSSQTNELYQLASVAFCLIVAWCSDKLGLSLELGSFAAGVMIATTDLAQHTLEQVRLHKKSGKYLCEYIDTSINCLLTCIDVVRCSTQLEIWIK 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00844 330 Pfam Sodium/hydrogen exchanger family 33 291 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cca05g00844 330 Gene3D - 26 297 IPR038770 -
Cca05g00844 330 PANTHER K(+) EFFLUX ANTIPORTER 6 1 292 - -
Cca05g00844 330 PANTHER POTASSIUM/PROTON ANTIPORTER-RELATED 1 292 IPR045158 GO:0015386|GO:0071805|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00844 Cca-Chr5 23082204 23090111 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00844 2 292 Antiporters AT5G11800 85.911 8.92e-179 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00844 - - gmx:100811030 555.058