Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00838 ATGCCAAAGATGAAGCACCTTCTGAGAAAGCTTCACATCGGTGGTGGCGCTGCCACCATCAATCACAATCACGACCACAACGCATTGTCGCACGCGCACCACActcctcctccctcctcctcctcctccgcgctccCTTCGCCCACCGTCGTCTCGGATCGGAGCCCCGTCGTCGAGGCGCAAAACGAAGTCGTCGATTTCAACCTCCTGCAAGAGGAGGAGTTTCAGATGCAACTCGCCCTCGCAATCAGCGCCTCCGATTCCGATCGTCATGACACCGCCGAATCGGCGCAGATCGACGCCGCCAAACAGATCAGCCTCGGTTACTCGGCTTCTCTCACTGACACTCGTGCCCTAGTTCAGTTCCAATCCCTTCGTTATTGGAACTACAATGTGATTGGTTATGATGATAAAGTGATGGATGGGTTTTATGATGTTTATGGGGTTACCTCGAATTTGGTTGAGCGGGGGAAGATGCCATTGTTGGTGGATCTGCAAATGGCTCCCGTATCAGATGTTGACTGTGAAGTGATTTTGGTGAACCACGTGGTTGATCTTGAGCTCAATCTGCTTGAGAGAAAGGTGTGTAGTTTGGTCGAGGAGTGTTGTGTTTCTGAGCTGGGACTGATTTTGAGTGGCTTACTCCAGAAGCTTGCGGATGTCGTTGTTAATAGAATGGGTGGACCGGTTGTTAATGCTGATAAACTTACAAAGAGGTGGGCTATGAGGAGTCGTGAGCTACGGGATTCTATGAGAACCATTGTTCTTTCCCTTGGCTGTCTGGATGTCGGTCTTTCGCGTCACCGGGCCCTGCTTTTTAAGGTACTTGCTGATAGGATTAACATTCCCTGCATGCTGGTAAAAGGGAGCTATTATACAGGAACTGACGATGGGGCTGTGAATTTGATTAAAGCTGATGATGGGAGTGAATACATTATTGATTTGATGGAGATTGTAGGACTACCTAACAAGGCTCATTCAATGGTAGATGATGGAACTGGTGTGGCAGGAGTCTTTTCTGATTGTGGTAGGATTTCAACAGTTGGGAGGGTCCAGACAGAAGAATTATTAGTTATGGGCAGTCAAACAAAGCCAGATGAAATAAATCATGTTAAAGTAAATAAGACGAGGAGACTTGAACATACAGAATCATCACCTGCAGAAAATATGCGTGTAAAAAATGTCTCCAAGTATGTTCTCAGTGCAGCAAAGGACCCAGAATTTGCTCAAAAACTGCACAATGTTCTAATAGAGAGTGGTGCCTTGCCACCTCCTGATCTTTTTACAGATATAAATCCCCAAGATAGGGGTGTAGGTAAAGTAAATGAAAAAATTGTTGGTGATACTGTTCAAGGTGACACAAATAGATTGTTATTAAGCTACAAAAAGCCTCTCATGCCCTCACATGGGATGGGCTCTGCCAGTGATACTAGGTTATGTCAATCAGCTGACTTGTTAACTGAGCAGCAAAAAGAATTGCATACAGATGATGTTGAATTTTACAATTCTTCACAGGGTGATAATACAAGGAATGCGTATTTAATGGTTTCTGACAGAGATAATGACGTAGATCAATCTAACACAGTAAATGTTGATTTGGCTTCTATCCATTCAAATAACATATGTAAAGAAAAGTTTCCCAAGTCTTCCTTGCCCAAGGCAGCTATTTCTTGCAGAAGACAAAATGGGGTTGATTCTTTCTGTGACGATGATGAAAATGGTTTTAGAAACAATGTTGAAGCTTCTTATAATGACATTGAATTGGGGAAAGATTCAGCTGTTCAAATAAATGATACAGGGGTCAATGTAGATTGTTATGGTGGTAGAAACAAGGAAGTTAACCCAGTGCTTGGTGAAGGCACAGAATGGGAAATTCAATGGGAGGATCTTGACATTGGTGAGCGTATTGGTATTGGTTCTTATGGTGAAGTTTATCATGCTGATTTGGATGGCACTGAAGTTGCTGTAAAGAAGTTTTTGGACCAAGATTTCTCTGGTGATGCACTGGCTCAGTTCAAATCTGAAGTTGAGATCATGTTAAGGCTGCGGCATCCTAATGTTGTGCTCTTCATGGGAGCTATTACTCGCCCCCCACATTTATCTATCTTGACAGAGTTTCTTCCAAGAGGCAGTTTATATAGGCTATTGCATCGTGCCAATCTTCGACTTGACGAGAAGAGACGGTTGCGCATGGCTCTAGATGTGGCTAAGGGAATGAATTACTTGCACACAAGCCATCCTATCATTGTCCACCGGGATTTAAAGTCTCCTAATCTTCTTGTTGACAGGCATTGGGTTGTTAAGGTCAGTGATTTTGGTCTGTCGCGGATGAAGCACCATACATTTTTGTCATCCAAGTCTTGTGCTGGAACGCCTGAGTGGATGGCACCAGAAGTTTTAAGAAATGAGCCAGCCAATGAGAAGTGTGATGTGTATAGTTTTGGTGTGATCTTGTGGGAGTTGACTACCACAAGAATTCCCTGGGAAGGTTTGAACCCAATGCAGGTTGTTGGAGCTGTTGGATTCCAAAATAGACGGCCTGAAATTCCAGAAGATGTGAATCCAGCAGTAGCACAAATAATACGTGATTGCTGGCAAACGGAGCCACACTTGCGGCCATCGTTCTCACAGCTGATGTCTCGTCTTTACCGTCTTCAACATTTGGTTGTCCCAAAACCAAGCTCAACTCATTAA 2694 0.4343 MPKMKHLLRKLHIGGGAATINHNHDHNALSHAHHTPPPSSSSSALPSPTVVSDRSPVVEAQNEVVDFNLLQEEEFQMQLALAISASDSDRHDTAESAQIDAAKQISLGYSASLTDTRALVQFQSLRYWNYNVIGYDDKVMDGFYDVYGVTSNLVERGKMPLLVDLQMAPVSDVDCEVILVNHVVDLELNLLERKVCSLVEECCVSELGLILSGLLQKLADVVVNRMGGPVVNADKLTKRWAMRSRELRDSMRTIVLSLGCLDVGLSRHRALLFKVLADRINIPCMLVKGSYYTGTDDGAVNLIKADDGSEYIIDLMEIVGLPNKAHSMVDDGTGVAGVFSDCGRISTVGRVQTEELLVMGSQTKPDEINHVKVNKTRRLEHTESSPAENMRVKNVSKYVLSAAKDPEFAQKLHNVLIESGALPPPDLFTDINPQDRGVGKVNEKIVGDTVQGDTNRLLLSYKKPLMPSHGMGSASDTRLCQSADLLTEQQKELHTDDVEFYNSSQGDNTRNAYLMVSDRDNDVDQSNTVNVDLASIHSNNICKEKFPKSSLPKAAISCRRQNGVDSFCDDDENGFRNNVEASYNDIELGKDSAVQINDTGVNVDCYGGRNKEVNPVLGEGTEWEIQWEDLDIGERIGIGSYGEVYHADLDGTEVAVKKFLDQDFSGDALAQFKSEVEIMLRLRHPNVVLFMGAITRPPHLSILTEFLPRGSLYRLLHRANLRLDEKRRLRMALDVAKGMNYLHTSHPIIVHRDLKSPNLLVDRHWVVKVSDFGLSRMKHHTFLSSKSCAGTPEWMAPEVLRNEPANEKCDVYSFGVILWELTTTRIPWEGLNPMQVVGAVGFQNRRPEIPEDVNPAVAQIIRDCWQTEPHLRPSFSQLMSRLYRLQHLVVPKPSSTH 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00838 897 SUPERFAMILY Protein kinase-like (PK-like) 621 890 IPR011009 -
Cca05g00838 897 CDD STKc_MAP3K-like 636 882 - -
Cca05g00838 897 ProSitePatterns Protein kinases ATP-binding region signature. 636 658 IPR017441 GO:0005524
Cca05g00838 897 ProSitePatterns Serine/Threonine protein kinases active-site signature. 749 761 IPR008271 GO:0004672|GO:0006468
Cca05g00838 897 Gene3D Transferase(Phosphotransferase) domain 1 709 892 - -
Cca05g00838 897 PANTHER SERINE/THREONINE-PROTEIN KINASE EDR1 369 894 - -
Cca05g00838 897 PANTHER SERINE/THREONINE-PROTEIN KINASE EDR1 61 317 - -
Cca05g00838 897 Pfam Ethylene-responsive protein kinase Le-CTR1 121 317 - -
Cca05g00838 897 MobiDBLite consensus disorder prediction 33 55 - -
Cca05g00838 897 Pfam Protein tyrosine and serine/threonine kinase 631 882 IPR001245 GO:0004672|GO:0006468
Cca05g00838 897 Gene3D Phosphorylase Kinase; domain 1 623 707 - -
Cca05g00838 897 PRINTS Tyrosine kinase catalytic domain signature 853 875 IPR001245 GO:0004672|GO:0006468
Cca05g00838 897 PRINTS Tyrosine kinase catalytic domain signature 704 717 IPR001245 GO:0004672|GO:0006468
Cca05g00838 897 PRINTS Tyrosine kinase catalytic domain signature 809 831 IPR001245 GO:0004672|GO:0006468
Cca05g00838 897 PRINTS Tyrosine kinase catalytic domain signature 743 761 IPR001245 GO:0004672|GO:0006468
Cca05g00838 897 PRINTS Tyrosine kinase catalytic domain signature 790 800 IPR001245 GO:0004672|GO:0006468
Cca05g00838 897 PANTHER SERINE-THREONINE PROTEIN KINASE 369 894 - -
Cca05g00838 897 PANTHER SERINE-THREONINE PROTEIN KINASE 61 317 - -
Cca05g00838 897 ProSiteProfiles Protein kinase domain profile. 630 890 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00838 897 SMART serkin_6 630 889 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00838 897 MobiDBLite consensus disorder prediction 17 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00838 Cca-Chr5 23013211 23028114 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00838 613 896 MAP Kinase Kinase Kinase AT5G11850 82.394 2.57e-169 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Cca05g00838 PK_Tyr_Ser-Thr 4.7e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00838 K04424 - gmx:100779137 1509.2