Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00834 ATGACTCCTTATTCTCTGAACCCACCTGGTTCAGGTCCTTCCACACAAGGTCAATCCCACCTCTTCATTTCTCCTAATAATCAAGACTGCCCTACCTTTTATAACATATTTGATCCAAGGAAAACCATAGAAATTGGAGGGTTTACAGAAAATTATCAACAGGATGAAAAGATGGTACTGCATGATGGGTCAGGATCATCAAGCAGCAATTGCAACTCATCCTTCAATATTTCAGCTGAGCATGTTATGGAGGATCGAAGCAGCGCAGGTGAGAGTAATTTAGGGTCAGAAGATAGCAAAAACAATGTTAGTCACGGGTCTGGGAAATGGATGTCTTCAAAGATGAGGTTGATGCAAAAAATGATGAGGCCGAGTATGAGTCCAACCACTGACAAATTAGCAATCAATCCAAACCCAAGATTCCAAAATCAAGGGCACCAAAGCAGGTACAGCCAAAGAAGCCCTCGTAAATACAACAACACCACCACCACTAGGGTTTGTTCGGACTGTAACACAAGCAGTACCCCACTTTGGAGGAGTGGCCCTAAAGGTCCTAAGTCTCTTTGCAATGCTTGTGGCATTAGACAGAGGAAGGCAAGAAGGGCAATGGCGGAAGCTGCAAATGGGTTAGTGACTCCCATGAATGCAGCATGTGCAAAGAGCAGAGTTAATAACAAGGAAAATAAGTCTCGAACACACCATTTTGCACAGTTCAAGAACAAGTACAAGTACTCCACTAGCACTACTGCTGAAGGCTCATCTGAGGGGGTTAAGAAGCTTGAATATTTCAATGATTTCGCCATAAGTTTGAGGGGTAACTCTACTTTTCAACAAGTGTTTCCACGAGATGAAGTAGCTGAGGCCGCAATGCTTCTCATGGACTTATCTTGTGGCTTTGTTCACTTATAA 909 0.4323 MTPYSLNPPGSGPSTQGQSHLFISPNNQDCPTFYNIFDPRKTIEIGGFTENYQQDEKMVLHDGSGSSSSNCNSSFNISAEHVMEDRSSAGESNLGSEDSKNNVSHGSGKWMSSKMRLMQKMMRPSMSPTTDKLAINPNPRFQNQGHQSRYSQRSPRKYNNTTTTRVCSDCNTSSTPLWRSGPKGPKSLCNACGIRQRKARRAMAEAANGLVTPMNAACAKSRVNNKENKSRTHHFAQFKNKYKYSTSTTAEGSSEGVKKLEYFNDFAISLRGNSTFQQVFPRDEVAEAAMLLMDLSCGFVHL 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00834 302 Pfam GATA zinc finger 167 200 IPR000679 GO:0006355|GO:0043565
Cca05g00834 302 CDD ZnF_GATA 166 203 IPR000679 GO:0006355|GO:0043565
Cca05g00834 302 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 29 301 - -
Cca05g00834 302 SMART GATA_3 161 212 IPR000679 GO:0006355|GO:0043565
Cca05g00834 302 ProSiteProfiles GATA-type zinc finger domain profile. 161 197 IPR000679 GO:0006355|GO:0043565
Cca05g00834 302 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 29 301 - -
Cca05g00834 302 MobiDBLite consensus disorder prediction 1 24 - -
Cca05g00834 302 MobiDBLite consensus disorder prediction 89 109 - -
Cca05g00834 302 MobiDBLite consensus disorder prediction 124 166 - -
Cca05g00834 302 MobiDBLite consensus disorder prediction 84 111 - -
Cca05g00834 302 ProSitePatterns GATA-type zinc finger domain. 167 192 IPR000679 GO:0006355|GO:0043565
Cca05g00834 302 Gene3D - 161 243 IPR013088 GO:0006355|GO:0008270
Cca05g00834 302 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 160 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00834 Cca-Chr5 22923379 22926158 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00834 107 301 C2C2-Gata Transcription Factor Family AT4G26150 37.156 1.93e-30 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Cca05g00834 GATA 3.1e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00834 - - gmx:100780326 414.075