Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00823 ATGTCGAATTTGACGTCTGCATCGAGTGAAATAAGTGCTTCTTCTGGAATCAGGAATGACAATGGTTCTCTCTATGCTCAATACTCCTCTACTTCAATAAATCAAGAACCACAGCCTAAAAAGAAAAGAAGTCTTCCGGGCCACCCAGACCCTGGGGCAGAAGTGATAGCTTTGACTCCTCAAACCCTTTTGGCAACGAACAGGTTCGTTTGTGAGATTTGTCAGAAAGGGTTTCAGAGAGATCAGAATCTGCAGCTTCACAGAAGAGGGCACAATTTGCCATGGAAGCTAAAGAAGAAGAGCAGCAAAGAGGGAAGAAAGAAAGTGTATGTGTGCCCAGAGGCAACGTGCGTTCACCATGACCCTTCAAGGGCCCTTGGCGACCTCACTGGAATCAAAAAGCACTTTTTCAGGAAGCACGGTGAGAAGAAATGGAAGTGTGAGAAGTGCTCCAAACGCTACGCAGTTCAATCGGATTGGAAGGCACACTCCAAAATTTGTGGCACCAGAGACTATAAATGCGACTGTGGTACCATTTTCTCTAGGAGGGACAGCTTTATCACACACAGAGCCTTCTGTGATGCCTTAGCACAGGACAGCATTAGAGCAGTGAaccttcaccctcaccctctcctatcaactcacacccAATTTCACAGCCATGCCCTTCAAGCACCACCATCATTTCTCAAAAGAGAACAAGAGTTCAACCTACTAAGTCCAGAAATTCTATCATGGCTGGCTTCTCCAACAGCAGAAGAAGAAGCAGCAGCAATGTTCCACAATCAAACTATAAGAACCCTAGACTTAACACATGTCAACCACTCCTTAAACCCTAACCCTAACCCTACAACTTCACCAACAGCTACCACTTTGCTTCCTAACTCCCTGAGTTGCTTCCACTATTTCACTAATCCTCCTCACGTGTCAGCCACTGCTTTGTTGCAAAAAGCCTCACAAATAGGGAGTGCAGCACCTTCACAAGTTAGACCCCACTTGTTGCTGCAACAGGTTCACGTGCCTCATGATGAGTGTACAACGACAGGGTATTACATGGCTTCATCTTCAGCCGTTTCTGGAATAGTTATGCCTTCACGTGAAGAAATAGGCACTGGGGGGTTTGCTCGTGGCATGGCATCTTGA 1143 0.4462 MSNLTSASSEISASSGIRNDNGSLYAQYSSTSINQEPQPKKKRSLPGHPDPGAEVIALTPQTLLATNRFVCEICQKGFQRDQNLQLHRRGHNLPWKLKKKSSKEGRKKVYVCPEATCVHHDPSRALGDLTGIKKHFFRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTRDYKCDCGTIFSRRDSFITHRAFCDALAQDSIRAVNLHPHPLLSTHTQFHSHALQAPPSFLKREQEFNLLSPEILSWLASPTAEEEAAAMFHNQTIRTLDLTHVNHSLNPNPNPTTSPTATTLLPNSLSCFHYFTNPPHVSATALLQKASQIGSAAPSQVRPHLLLQQVHVPHDECTTTGYYMASSSAVSGIVMPSREEIGTGGFARGMAS 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00823 380 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 3 332 - -
Cca05g00823 380 SUPERFAMILY beta-beta-alpha zinc fingers 68 165 IPR036236 -
Cca05g00823 380 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Cca05g00823 380 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 91 IPR013087 -
Cca05g00823 380 SMART c2h2final6 69 91 IPR013087 -
Cca05g00823 380 SMART c2h2final6 110 140 IPR013087 -
Cca05g00823 380 SMART c2h2final6 145 165 IPR013087 -
Cca05g00823 380 MobiDBLite consensus disorder prediction 1 54 - -
Cca05g00823 380 Gene3D Classic Zinc Finger 68 92 - -
Cca05g00823 380 Gene3D Classic Zinc Finger 102 193 - -
Cca05g00823 380 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 3 332 - -
Cca05g00823 380 MobiDBLite consensus disorder prediction 1 39 - -
Cca05g00823 380 Pfam Zinc finger, C2H2 type 69 91 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00823 Cca-Chr5 22694553 22699287 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00823 20 325 IDZ Gene Family AT3G50700 52.959 5.40e-112 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca05g00823 zf-C2H2 0.0087 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00823 K25870 - gmx:100783557 515.383