Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00816 ATGGGTGCGTCTGGAAAATGGGTGAAAGCGCTAATCGGTCTTAAGAAGCCCGACAACATAAATGAACACGGTGCGAAGAAGAAGAAGTGGAGGCTATGGAAGAGTTCCTCCGCCGGGGAAAACAGATCTCAAGACGGGTTTCTTAACGCGCCTTCCGATTCCGATTCATTCACCGCCGCAGTGGCCACCGTGGTCAGAGCTCCACCTAAGGATTTCAGACTCCTCAAGCAAGAATGGGCCGCTACAAGAATCCAAACAGCCTTCCGGGCATTCTTGGCGAGAAGGGCATTGAGGGCGTTGAAGGGAGTGGTGAGGCTTCAAGCTCTTGTAAGGGGTAGGTTGGTGAGGAAGCAGGCTGCGGTGACATTGAGGTGCATGCAGGCCTTGGTGCGTGTGCAAGCGCGTGTAAGGGCGCGCCGCGTTAGAATGTCCATTGAGGGGCAAGCTGTGCAGAACATGCTCAATGAGCGCCGCACCAAAGCTGAACTCATCAAACAAGCTGAGGAAGGGTGGTGCGATAGCAAAGGATCGTTGGATGATGTCAAGACGAAATTGCAGATGAGGCAAGAAGGAGCTTTCAAGAGGGAGAGAGCAATTGCCTACTCTCTTGCCCACAAGCAGTGGAGATCAACCCCCATCTCTAGTTCAAGACCAAATGCTTCTCTCAACAATCAAGAGATGGACAAGGCTAACTGGGGATGGAGTTGGTTGGAACGTTGGATGGCTGCTAAGCCATGGGAGAGTAGATTAATGGAGCAAACCCATCATGCTGATTCCACAGATAAGACCCCTCCTCCACCAAAGAAATGTGTGGACTCTTCAAACTCAAAAACATCAGAACCATGCAATGTTAGAGTCAGAAAGAACAATGTCACCACAAGGATTTCTGCTAGACCTCCCCATCTTGGACAAGCCACTCGTTCAACCTCAAGTCCAAGTTCTGAATTTCACTATGATGAGTGCTCAGCTTCATCTTCATTATGCACTTCTACAACACCAGTATCTGGGAGTACTGCATTGCCTTGTGACAGGACAGAGGATAGTAACAATAATAACACTAGCATTAGGCCTAGTTACATGAACCTGACCGAGTCAACCAAGGCAAAGCAGAAAACCAGCAATCATCATCAATACAATAGAGCTCAGAGGCAGCAATCCATGGATGAGTTCCAGTTTTTCAAAAAGACAGCGGTTTTCTCTAATGGGGATTCCAAAAGCACCGGTGCTTCTGACCCTTCGGTCAACTTTGCTAGGCCACTTTATCTACCAACCTACTTGGATAAGAGGCCACGGTGA 1296 0.49 MGASGKWVKALIGLKKPDNINEHGAKKKKWRLWKSSSAGENRSQDGFLNAPSDSDSFTAAVATVVRAPPKDFRLLKQEWAATRIQTAFRAFLARRALRALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSIEGQAVQNMLNERRTKAELIKQAEEGWCDSKGSLDDVKTKLQMRQEGAFKRERAIAYSLAHKQWRSTPISSSRPNASLNNQEMDKANWGWSWLERWMAAKPWESRLMEQTHHADSTDKTPPPPKKCVDSSNSKTSEPCNVRVRKNNVTTRISARPPHLGQATRSTSSPSSEFHYDECSASSSLCTSTTPVSGSTALPCDRTEDSNNNNTSIRPSYMNLTESTKAKQKTSNHHQYNRAQRQQSMDEFQFFKKTAVFSNGDSKSTGASDPSVNFARPLYLPTYLDKRPR 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00816 431 Pfam IQ calmodulin-binding motif 79 98 IPR000048 GO:0005515
Cca05g00816 431 Pfam IQ calmodulin-binding motif 101 118 IPR000048 GO:0005515
Cca05g00816 431 PANTHER IQ-DOMAIN 5-RELATED 1 429 - -
Cca05g00816 431 MobiDBLite consensus disorder prediction 365 384 - -
Cca05g00816 431 ProSiteProfiles IQ motif profile. 101 128 IPR000048 GO:0005515
Cca05g00816 431 MobiDBLite consensus disorder prediction 31 50 - -
Cca05g00816 431 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 429 - -
Cca05g00816 431 SMART iq_5 99 120 IPR000048 GO:0005515
Cca05g00816 431 SMART iq_5 76 98 IPR000048 GO:0005515
Cca05g00816 431 MobiDBLite consensus disorder prediction 252 358 - -
Cca05g00816 431 ProSiteProfiles IQ motif profile. 77 105 IPR000048 GO:0005515
Cca05g00816 431 MobiDBLite consensus disorder prediction 36 50 - -
Cca05g00816 431 MobiDBLite consensus disorder prediction 269 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00816 Cca-Chr5 22543946 22546179 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00816 1 431 IQD Protein Family AT2G26180 59.050 5.89e-144 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00816 - - gmx:100787102 654.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00816 05 22543946 22546179 Cca03g01727 03 36380932 36382974 PCT