Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00803 ATGGCATTTCGATTTGGGGTCCTTATTTTGGCTTTGCTGATTTGTTTGAATGTCAATTCTGGGGAATCAGATGATGGGGCAACGTTGTTGGAGATAAAGAAGTCATTCAGGGATGTGGATAATGTTCTCTATGATTGGACAGACTCACCATCATCCGATTATTGTGCCTGGAGAGGAATCGCATGTGATAATGTCACCTTTAATATTGTTGCACTCAATCTTTCAGGGTTGAATCTTGATGGCGAAATTTCACCTGCAATAGGGAACCTTCAGAGTTTGGTCTCTATTGACCTCCGAGAAAACAGGTTATCAGGGCAGATACCGGATGAGATTGGTGACTGTTCTTCTTTAAAGAGTTTGGACTTGTCATTTAATGAAATTAGAGGGGATATACCATTTTCCATTTCTAAGTTGAAACAACTGGAGAATCTGATTTTGAAAAATAACCAGTTGATTGGACCAATTCCTTCAACATTGTCTCAGATTCCTAATTTGAAGATTCTAGACCTGGCTCAAAATAATCTTAGCGGTGAAATACCAAGGCTTATATATTGGAATGAAGTTTTGCAATATCTGGGCTTGAGAGGGAACAATTTGGTTGGTTCACTATCACCAGACATGTGCCAGTTAACTGGGTTGTGGTATTTTGATGTGAGAAACAATAGCTTGACAGGAAGTATTCCAGAGAACATAGGCAACTGTACTGCCTTCCAGGTCTTGGATTTATCTTACAACCAGCTAACTGGAGAGATACCTTTTAATATTGGATTCTTGCAAGTAGCAACTTTGTCATTGCAAGGCAATAAACTCTCTGGACATATTCCATCGGTGATTGGCCTCATGCAAGCACTTGCTGTCTTAGACTTAAGTTGTAACATGTTGAATGGACCAATCCCTCCTATTTTGGGAAATCTGACCTACACAGAAAAATTGTACTTGCATGGAAACAAGCTGACTGGCTTCATACCTCCAGAGCTTGGAAATATGACAAAGCTTCACTATTTGGAACTGAATGATAACCATTTAAGTGGACATATCCCCCCTGAGCTTGGAAAGCTTACTGATCTGTTTGACTTAAATGTTGCTAACAACAATCTTGTGGGGCCAATTCCTAGTAATATTAGCTCTTGTAAAAATCTCAACAGCCTCAATGTGCATGGGAACAATTTGAATGGAACAATTCCCCCTGCTTTGCAGAGCTTGGAGAGCATGACGTCTTTGAATCTTTCTTCCAACAACCTTCAGGGCGCAATTCCTATTGAACTGTCACGGATTGGAAATTTGGATACATTGGATATTTCAAACAATAATTTAGTTGGTTCCATCCCTTCTTCCCTTGGTGACTTGGAACATCTTCTGAAGTTGAATCTGAGCAGAAACAATTTAACAGGAGTTATTCCAGCAGAATTTGGAAATCTTAGAAGTGTTATGGAAATTGATCTCTCAAATAATCAACTCTCTGGCTTGATTCCTGAAGAGCTTAGTCAGCTTCAGAACATGATATCCTTGAGACTTGAAAGAAACAAACTAACTGGTGATGTGGCATCACTTTCAAATTGCCTTAGTCTCTCTCTGCTTAATGTGTCTTATAACAAATTATTTGGTGTTATCCCCACGAGTAACAACTTTACCAGGTTTCCCCCTGACAGTTTCATTGGAAACCCTGGTCTTTGTGGTAATTGGCTGAATTTGCCGTGTCATGGTTCTCACCCTTCGGAGCGAGTTACATTATCTAAGGCTGCCATTCTTGGAATTACTCTTGGTGCCCTTGTGATTCTTCTTATGGTATTGCTGGCTGCTTGCCGACCGCACAATCCATCTCCTTTTTCTGATGGATCACTTGACAAACCAGTTAATTACTCCCCTCCAAAACTTGTGATTCTTAATATGAATATGGCACTTCATGTGTATGAAGATATCATGAGGATGACAGAAAACCTGAGTGAGAAGTATATAATTGGATATGGTGCATCAAGTACAGTTTATAAATGTGTTCTTAAGAATTGCAAGCCAGTGGCTATCAAGAGGATCTATTCTCACTATCCCCAATGCATTAAAGAATTTGAAACTGAACTCAAGACAGTTGGCAGCATTAAGCACCGGAATCTGGTCAGTCTCCAAGGCTACTCGTTGTCTCCATATGGCCACCTTCTGTTTTATGACTACATGGAAAATGGCAGTCTATGGGATCTTCTTCATGGACCTACGAAGAAGAAAAAACTTGACTGGATTCTGCGTCTAAAAATAGCACTTGGAGCAGCACAAGGGCTTGCTTATCTACACCATGATTGCAGTCCTCGAATCATCCACAGGGATGTGAAATCATCTAACATTTTATTAGATGCAGATTTTGAGCCCCATCTCACTGATTTTGGCATTGCCAAAAGTCTCTGCCCCACAAAGTCCCACACTTCTACTTACATAATGGGCACAATTGGCTACATAGACCCTGAGTATGCTAGAACTTCTCGACTCACTGAGAAGTCTGATGTGTACAGTTATGGTATCGTTTTACTTGAGTTGCTAACTGGAAGGAAAGCTGTTGACAATGAATCCAACCTCCACCATCTGATTTTGTCCAAGGCAGCAACCAATGCTGTAATGGAAACAGTTGATCCAGACATTACTGCTACATGCAAGGACTTAGGAGCTGTGAAAAAGGTTTATCAGCTTGCTCTACTATGCACAAAAAGACAGCCAGCTGATAGGCCTACAATGCATGAAGTGACACGTGTACTCGGAAGCCTCATGCCATCTAGCACCCCACCGAAACAACCAGAAGCACTGCCACCTTCCAATCCATCAGCCAAAGTGCCATGCTACATGGACGAATATGCAAATCTCAAGACTCCACACTTGGTGAACTGCCCCTCAATGAGCACCTCAGATGCACAACTCTTCCTCAAGTTTGGAGAGGTAATCTCTCAAAACAGTGAGTGA 2940 0.4116 MAFRFGVLILALLICLNVNSGESDDGATLLEIKKSFRDVDNVLYDWTDSPSSDYCAWRGIACDNVTFNIVALNLSGLNLDGEISPAIGNLQSLVSIDLRENRLSGQIPDEIGDCSSLKSLDLSFNEIRGDIPFSISKLKQLENLILKNNQLIGPIPSTLSQIPNLKILDLAQNNLSGEIPRLIYWNEVLQYLGLRGNNLVGSLSPDMCQLTGLWYFDVRNNSLTGSIPENIGNCTAFQVLDLSYNQLTGEIPFNIGFLQVATLSLQGNKLSGHIPSVIGLMQALAVLDLSCNMLNGPIPPILGNLTYTEKLYLHGNKLTGFIPPELGNMTKLHYLELNDNHLSGHIPPELGKLTDLFDLNVANNNLVGPIPSNISSCKNLNSLNVHGNNLNGTIPPALQSLESMTSLNLSSNNLQGAIPIELSRIGNLDTLDISNNNLVGSIPSSLGDLEHLLKLNLSRNNLTGVIPAEFGNLRSVMEIDLSNNQLSGLIPEELSQLQNMISLRLERNKLTGDVASLSNCLSLSLLNVSYNKLFGVIPTSNNFTRFPPDSFIGNPGLCGNWLNLPCHGSHPSERVTLSKAAILGITLGALVILLMVLLAACRPHNPSPFSDGSLDKPVNYSPPKLVILNMNMALHVYEDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRIYSHYPQCIKEFETELKTVGSIKHRNLVSLQGYSLSPYGHLLFYDYMENGSLWDLLHGPTKKKKLDWILRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDADFEPHLTDFGIAKSLCPTKSHTSTYIMGTIGYIDPEYARTSRLTEKSDVYSYGIVLLELLTGRKAVDNESNLHHLILSKAATNAVMETVDPDITATCKDLGAVKKVYQLALLCTKRQPADRPTMHEVTRVLGSLMPSSTPPKQPEALPPSNPSAKVPCYMDEYANLKTPHLVNCPSMSTSDAQLFLKFGEVISQNSE 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00803 979 ProSitePatterns Serine/Threonine protein kinases active-site signature. 768 780 IPR008271 GO:0004672|GO:0006468
Cca05g00803 979 SUPERFAMILY L domain-like 25 258 - -
Cca05g00803 979 SUPERFAMILY RNI-like 204 535 - -
Cca05g00803 979 MobiDBLite consensus disorder prediction 916 935 - -
Cca05g00803 979 Pfam Leucine rich repeat N-terminal domain 23 63 IPR013210 -
Cca05g00803 979 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 6 966 - -
Cca05g00803 979 Pfam Leucine rich repeat 92 151 IPR001611 GO:0005515
Cca05g00803 979 Pfam Leucine rich repeat 427 486 IPR001611 GO:0005515
Cca05g00803 979 ProSitePatterns Protein kinases ATP-binding region signature. 653 675 IPR017441 GO:0005524
Cca05g00803 979 ProSiteProfiles Leucine-rich repeat profile. 164 186 IPR001611 GO:0005515
Cca05g00803 979 Gene3D Ribonuclease Inhibitor 261 574 IPR032675 -
Cca05g00803 979 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERECTA 6 966 - -
Cca05g00803 979 SMART LRR_typ_2 210 234 IPR003591 -
Cca05g00803 979 SMART LRR_typ_2 329 353 IPR003591 -
Cca05g00803 979 SMART LRR_typ_2 401 425 IPR003591 -
Cca05g00803 979 SMART LRR_typ_2 162 186 IPR003591 -
Cca05g00803 979 SMART LRR_typ_2 90 114 IPR003591 -
Cca05g00803 979 SMART LRR_typ_2 473 496 IPR003591 -
Cca05g00803 979 SMART LRR_typ_2 449 472 IPR003591 -
Cca05g00803 979 SMART serkin_6 647 913 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00803 979 Gene3D Ribonuclease Inhibitor 186 260 IPR032675 -
Cca05g00803 979 ProSiteProfiles Protein kinase domain profile. 647 917 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00803 979 CDD STKc_IRAK 653 916 - -
Cca05g00803 979 ProSiteProfiles Leucine-rich repeat profile. 116 139 IPR001611 GO:0005515
Cca05g00803 979 Gene3D Ribonuclease Inhibitor 22 185 IPR032675 -
Cca05g00803 979 SUPERFAMILY Protein kinase-like (PK-like) 625 913 IPR011009 -
Cca05g00803 979 Pfam Protein kinase domain 650 910 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00803 979 Gene3D Phosphorylase Kinase; domain 1 619 722 - -
Cca05g00803 979 Gene3D Transferase(Phosphotransferase) domain 1 723 925 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00803 Cca-Chr5 22318210 22327258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00803 93 978 Receptor kinase-like Gene Family AT5G07180 65.953 0.0 1140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Cca05g00803 Pkinase 7.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00803 K20718 - gmx:100782307 1850.1