Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca05g00799 | ATGCTTTACTACGTTCTCACCACTGGCTCGGGACAGCAAACCCTAGGAGAGGAATACTGCGATATCACTCAGGTTGCTGGGCCTTATGGACTTCCTCCAACCCCTGCTAGACGTGCTCTTTTCATTGTATATCAGACGGCTATTCCATATATCGCGGAACGAATCAGTTCTAGAATTGCTTCACGAGGCATTGTCCTTGCTGACTTGGAGTCTGCTGAGGGTTTTGGTGAAAATGGACACGGGAGCCTTAGTTCTCAGATTTCAGGCACCAGTCCTTCATCCTTGTCGGGACAATCTGTTACTACTATGTCAAGGTTGAAGGGGAAACTGAGTGCATTTTGGTTGCATTTGGTTCAGAGATGGCCTACGATGCTCCCTTTTGTGCGCGAGTTGTTGCAGTTGGTTCTTCGTGCTAACCTCATGTTATTCTACTTTGAAGGCCTCTATTATCATATATCCAAGCGTGCTGCAGGCATTCGATATGTATTTATTGGAAAAGCATCAAATCAAAGACCCAGATACCAAATACTAGGAGTATTTCTGTTGATTCAGCTTTGTATAATAGCTTCTGAAGGGCTGCGTCGAAGAAATTTTACTTCAATTGCTGGTTCAGTTCATCAAGCATCCTTCGCAACCCATCATGGATCAACAGGACATGGTTTGCCTGTTCTGAATGAAGAGGGTACTCTGGCTACTCCAGATATTGACAAAGGAAGTTGGGCCTCTGATTCTTCATCTTCTGAGCAGTATCATGCAACTAGTGGGGTTAGCAAATGCACACTTTGCCTGAGTAATCGTCAACACCCAACTGCTACATCCTGTGGCCATGTATTCTGCTGGTATTGTCTCGGTGCATTCTTACTGCTTACCATCGCTTCTTTCTGTGTCTCATTTTCGTGTTTGCTGTGA | 909 | 0.4499 | MLYYVLTTGSGQQTLGEEYCDITQVAGPYGLPPTPARRALFIVYQTAIPYIAERISSRIASRGIVLADLESAEGFGENGHGSLSSQISGTSPSSLSGQSVTTMSRLKGKLSAFWLHLVQRWPTMLPFVRELLQLVLRANLMLFYFEGLYYHISKRAAGIRYVFIGKASNQRPRYQILGVFLLIQLCIIASEGLRRRNFTSIAGSVHQASFATHHGSTGHGLPVLNEEGTLATPDIDKGSWASDSSSSEQYHATSGVSKCTLCLSNRQHPTATSCGHVFCWYCLGAFLLLTIASFCVSFSCLL | 302 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca05g00799 | 302 | Pfam | Pex2 / Pex12 amino terminal region | 1 | 194 | IPR006845 | - | |
| Cca05g00799 | 302 | ProSitePatterns | Zinc finger RING-type signature. | 274 | 283 | IPR017907 | - | |
| Cca05g00799 | 302 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 239 | 295 | IPR013083 | - | |
| Cca05g00799 | 302 | SUPERFAMILY | RING/U-box | 249 | 287 | - | - | |
| Cca05g00799 | 302 | MobiDBLite | consensus disorder prediction | 77 | 96 | - | - | |
| Cca05g00799 | 302 | CDD | RING-HC_PEX10 | 258 | 283 | - | - | |
| Cca05g00799 | 302 | PANTHER | PEROXISOME BIOGENESIS FACTOR 10 | 1 | 283 | - | - | |
| Cca05g00799 | 302 | MobiDBLite | consensus disorder prediction | 78 | 96 | - | - | |
| Cca05g00799 | 302 | ProSiteProfiles | Zinc finger RING-type profile. | 259 | 295 | IPR001841 | - | |
| Cca05g00799 | 302 | PANTHER | PEROXISOME ASSEMBLY PROTEIN 10 | 1 | 283 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Cca05g00799 | 201 | 295 | C3H Transcription Factor Family | AT3G58030 | 30.612 | 2.04e-06 | 47.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca05g00799 | K13346 | - | gmx:100783914 | 503.056 |