Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00793 ATGAGTTTGAAGAAGAACAGCCCTCAAATTCATGATCACAAGGGAGGCTCTCCATACCTGTCTCGCCAATCATCCAATAATTCCAGTAGTTTTAGGGCAAAGCAACAGAAGAATATCATTGTGGAGCCACCAAGCCCTCTACTGGTTGGGTGCTGCAGAGGCTTCAGCAATGGCAAGACCACAGCCTCCACATCACACCAACAATATCTGCCATACCAAAGGCTGCAACAAAAGGTGGAAGATTTGGAAAAGGAAGTGCAAAAACAGACAGAACTACGACTGATGTACAGGAAAAGAATGGAAAGGACACAAGATTATTTGAGGTATTGCCTTCAAATAGCACAAGAAAATGGAATATTGGATCTCATTGTTCACTCCAAAGGTGAACTTCAACAATCTCCACTCTCTCTCAGCTCCACTGCCAGCCCTCAAATTCAAATTCTCACTCCACCACACCACATGCATGCTCACCACCCTGATCTAGCACCCATTATTGATCAAGCAAAAATTAATGGTTGGTATATTGATCCAAGTGAGGTTGAATTGGAAGAGAAAATTGGGCAAGGAAGCACCGCAGAGATTCACAAAGGAACATGGCGTGGATTTGAGGTGGCAGTGAAGTGCATATCCGAAGAATTCTTCCGCACAAACGAAAACGGCGTCGCATACTTCTCTCAAGAGCTGGAAACGCTCTCGCGCCAGCGCCACAGGTTCGTGCTTCAGCTGATGGGCGCGTGCATCCACCCTCCCCGACGCGCGTGGCTCGTCACCGAGTACCTCACCACCACGCTCAAGGACTGGCTGCATGGGCCTGGGAACAGGCGCAAAGACCGAATGGCGCCACTTCCACCCTTCAAAGAGAGACTGGGCCGGGCCTTGGAAATAGCCCAAGCCATGCAGTATCTCCATGAGCAAAAGCCCAAGCTCATTCACCGCGACTTGAAGCCCAGCAACATTTTCCTCGATGATGCCTTGCACGTCAGAGTCGCTGATTTTGGTCACGCGCGCTTCTTGGGCGACGACGAAATGGCTCTCACCGGAGAAACAGGAACATATGTGTACATGGCACCGGAAGTAATTTGTTGTGAACCTTATGACGAAAAGTGTGATGTGTACAGTTTTGGGATTATATTGAACGAACTACTAACAGGAAATTACCCATACATTGAGACAGAATATGGTCCAACCAAGATTGCAATGGAAGTTGTGGAGGGTAAATTGCGGCCTAAGCTTGTAGACGATGAAATTAAGCAAATGGGAGAGCTTATTGACCTTATTTGCCTTTGTTGGGATAGAAATCCATCTACTCGACCATCCTTCGCTACAATCACCTTTTGCCTCAAAAGTTACACCACAAAGAATCTCCTTTAA 1371 0.4726 MSLKKNSPQIHDHKGGSPYLSRQSSNNSSSFRAKQQKNIIVEPPSPLLVGCCRGFSNGKTTASTSHQQYLPYQRLQQKVEDLEKEVQKQTELRLMYRKRMERTQDYLRYCLQIAQENGILDLIVHSKGELQQSPLSLSSTASPQIQILTPPHHMHAHHPDLAPIIDQAKINGWYIDPSEVELEEKIGQGSTAEIHKGTWRGFEVAVKCISEEFFRTNENGVAYFSQELETLSRQRHRFVLQLMGACIHPPRRAWLVTEYLTTTLKDWLHGPGNRRKDRMAPLPPFKERLGRALEIAQAMQYLHEQKPKLIHRDLKPSNIFLDDALHVRVADFGHARFLGDDEMALTGETGTYVYMAPEVICCEPYDEKCDVYSFGIILNELLTGNYPYIETEYGPTKIAMEVVEGKLRPKLVDDEIKQMGELIDLICLCWDRNPSTRPSFATITFCLKSYTTKNLL 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00793 456 ProSiteProfiles Protein kinase domain profile. 180 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00793 456 SMART serkin_6 180 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00793 456 PANTHER OS09G0443600 PROTEIN 46 453 - -
Cca05g00793 456 Pfam Protein kinase domain 181 443 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00793 456 Coils Coil 72 99 - -
Cca05g00793 456 ProSitePatterns Protein kinases ATP-binding region signature. 186 207 IPR017441 GO:0005524
Cca05g00793 456 SUPERFAMILY Protein kinase-like (PK-like) 160 443 IPR011009 -
Cca05g00793 456 MobiDBLite consensus disorder prediction 18 34 - -
Cca05g00793 456 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 46 453 - -
Cca05g00793 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 309 321 IPR008271 GO:0004672|GO:0006468
Cca05g00793 456 CDD STKc_MAP3K-like 186 444 - -
Cca05g00793 456 Gene3D Phosphorylase Kinase; domain 1 168 261 - -
Cca05g00793 456 Gene3D Transferase(Phosphotransferase) domain 1 262 453 - -
Cca05g00793 456 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00793 Cca-Chr5 21916879 21921288 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00793 173 443 MAP Kinase Kinase Kinase AT4G35780 38.235 2.09e-50 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-8 Cca05g00793 Pkinase 1.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00793 - - gmx:102666416 715.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00793 05 21916879 21921288 Cca05g00793 05 21916879 21921288 ECH