Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00791 ATGGTTGGAATATTTAGAAGCATGGATCAAAATCAACATGGTGAAGCAACAAGAGAGGTTGGTCCACCAGCTCATACCAATCCTCCAACTCAAACCGCTGGTCCATCTAACCCTTCATTCTACTCTAGAGAGCAACAATATGTTCCTCCCCAATACATGTACCAGCTACAACAAAACCAATTGCAACAACAACTTGATAATGTATGGGCAAAGCAGTACAAGGAAATTGAGGAGACCACTAATTTCAATACTCACAGCTTGCCTTTGGCCAAGATTAAGAAAATAATGAAGTTTGATGAAGATGTGAGGATGATCTCAGCTGAGGCTCCTATAGTGTTTGCCAAGGCCTGTGAAATGTTCATTCAGGATCTTACAACAAGAGCTTGGGCTAATGCTGACAATAACAATAGGAGGACCCTTAAAAAAATGGACATTACATCTGCAATCTCAAAGACTGATGTGTTTGATTTTCTTCTTGATATTGtgtaa 489 0.3947 MVGIFRSMDQNQHGEATREVGPPAHTNPPTQTAGPSNPSFYSREQQYVPPQYMYQLQQNQLQQQLDNVWAKQYKEIEETTNFNTHSLPLAKIKKIMKFDEDVRMISAEAPIVFAKACEMFIQDLTTRAWANADNNNRRTLKKMDITSAISKTDVFDFLLDIV 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00791 162 SUPERFAMILY Histone-fold 12 158 IPR009072 GO:0046982
Cca05g00791 162 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 30 162 - -
Cca05g00791 162 MobiDBLite consensus disorder prediction 1 42 - -
Cca05g00791 162 MobiDBLite consensus disorder prediction 24 42 - -
Cca05g00791 162 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3-RELATED 30 162 - -
Cca05g00791 162 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 86 149 IPR003958 -
Cca05g00791 162 Gene3D Histone, subunit A 51 162 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00791 Cca-Chr5 21852514 21853002 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00791 65 162 CCAAT-HAP5 Transcription Factor Family AT1G56170 68.367 1.03e-45 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Cca05g00791 CBFD_NFYB_HMF 7.2e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00791 K08066 - gmx:100808341 172.94