Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00790 ATGGACGCTGCTGCTCCCTACAATCCTCGTACCGTCGAAGAGGTCTTCCGGGATTTCAAGGGTCGCAGAGCTGCCTTGATTAAAGCCCTCACCTCCGATGTTGAAGAATTCTATCAGCAGTGCGATCCCGAGAAGGAAAATCTTTGCCTTTATGGATTTCCTAATGAGCTGTGGGAAGTCAATCTGCCTGCTGAGGAGGTGCCCCCAGAGCTACCGGAGCCAGCATTGGGCATTAACTTTGCCAGAGATGGGATGCAAGAAAAGGACTGGCTATCTTTGGTTGCTGTACACAGTGATGCTTGGTTACTTGCTGTGGCTTTTTATTTTGGTGCTAGGTTTGGATTTGATAAGGCTGATAGGAAGCGACTATTTAATATGATAAATGATCTTCCGACTATATTTGAGGTTGTTACAGGGATGGCCAAGAAACAAGGAAAGGAAAAGTCATCAGTTTCAAATCATAGCAGTAACAAATCAAAATCAAACTCCAAGCGAAGTTCTGAATCCAAGTATTCAAAAGCAATGCAATCAAAGGATGAGGATGATGAAGGTGTGGGTTTGGGTTTGGGTTTggaagaggaagatgaagaggaacatggagagACTCTGTGTGGGGCATGTGGAGAGAGCTATGCTGCTGATGAGTTCTGGATTTGCTGTGACATCTGTGAGAAATGGTTCCATGGAAAGTGTGTGAAGATTACCCCTGCACGTGCTGAACATATCAAGCAGTACAAATGTCCAACTTGCAGCAACAAGAGAGCTCGACCTTAA 774 0.4328 MDAAAPYNPRTVEEVFRDFKGRRAALIKALTSDVEEFYQQCDPEKENLCLYGFPNELWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFNMINDLPTIFEVVTGMAKKQGKEKSSVSNHSSNKSKSNSKRSSESKYSKAMQSKDEDDEGVGLGLGLEEEDEEEHGETLCGACGESYAADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPTCSNKRARP 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00790 257 MobiDBLite consensus disorder prediction 145 186 - -
Cca05g00790 257 Pfam PHD-finger 204 253 IPR019787 -
Cca05g00790 257 ProSitePatterns Zinc finger PHD-type signature. 204 250 IPR019786 -
Cca05g00790 257 SUPERFAMILY FYVE/PHD zinc finger 193 254 IPR011011 -
Cca05g00790 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 252 IPR013083 -
Cca05g00790 257 SMART PHD_3 203 251 IPR001965 -
Cca05g00790 257 MobiDBLite consensus disorder prediction 161 185 - -
Cca05g00790 257 ProSiteProfiles Zinc finger PHD-type profile. 201 253 IPR019787 -
Cca05g00790 257 CDD PHD_AL_plant 203 253 IPR044104 -
Cca05g00790 257 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 4 257 - -
Cca05g00790 257 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Cca05g00790 257 PANTHER CPG BINDING PROTEIN 4 257 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00790 Cca-Chr5 21827828 21835363 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00790 3 256 Alfin-like Transcription Factor Family AT3G42790 77.647 1.29e-129 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Cca05g00790 Alfin 3.6e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00790 - - gmx:100797908 437.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00790 05 21827828 21835363 Cca05g00790 05 21827828 21835363 ECH
Cca03g01703 03 36130250 36134548 Cca05g00790 05 21827828 21835363 ECH