Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00789 ATGAGTTCGACTCCAACAACCTACGAACTAGATTCAGTTAACTCAGTTTCGGATTCCCACGCGCCAAAGGAAATAGAGTGGCACATGCTGGACAAGTCCAAGTTCTTCATCCTGGGAGGAACCCTATTCTCGGGCCTCTCCGCCGCACTCTACCCCATCGTGACCAACGTCGCCGCCTCCGCCCTCGGCTCGGGCTTCTCCGACGCCTCCGCCGCCGCCATGGGCAGCGCCGCCGGGGGAGTGGCGTCCGCCACCGCCGCACAGATAGTGTGGACCCCGGTGGACGTGGTGAGCCAGAGACTGATGGTGGAACGCAACAACAACTACCGCAATGGGTTGGACGCGTTTAGGAGAATCGCGTGCGTGGAGGGGGCGAGGGGGTTGTACCGGGGGTTCGGGGTTTCGGTGGTGACTTACGCGCCGTGCAACGCGGTGTGGTGGGGTTCGTACTCGGTGGCGCAGAGGGTTACTTGGGGCGCGTTTGGGGAGGGGAATAGGGATTGGGAGGTGCAAGTGCAAGGGTTGAGTGCGGTTGTGGCTAGTGGGGTTTCGGCGATCGTGACGATGCCGCTGGACACTGTGAAGACGAGGTTGCAGGTGCAAGGGTTGAGTGTGGGGCTTGCGGTTCGGAGTTTGGTGAAGGAAGGAGGGGTTTTGGGTTGTTACAGAGGTTTGGGAGCGAGGTGGGTGTCTATGTCCGTGTCTGCTGCTACCATGATCACCACCTATGAGTTCTTGAAACGCGTCTCTGCTAAGAAGCTAGACAGATTAACTGTGTAG 780 0.5936 MSSTPTTYELDSVNSVSDSHAPKEIEWHMLDKSKFFILGGTLFSGLSAALYPIVTNVAASALGSGFSDASAAAMGSAAGGVASATAAQIVWTPVDVVSQRLMVERNNNYRNGLDAFRRIACVEGARGLYRGFGVSVVTYAPCNAVWWGSYSVAQRVTWGAFGEGNRDWEVQVQGLSAVVASGVSAIVTMPLDTVKTRLQVQGLSVGLAVRSLVKEGGVLGCYRGLGARWVSMSVSAATMITTYEFLKRVSAKKLDRLTV 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00789 259 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 14 54 - -
Cca05g00789 259 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 55 255 - -
Cca05g00789 259 Pfam Mitochondrial carrier protein 76 156 IPR018108 -
Cca05g00789 259 Pfam Mitochondrial carrier protein 171 252 IPR018108 -
Cca05g00789 259 ProSiteProfiles Solute carrier (Solcar) repeat profile. 168 249 IPR018108 -
Cca05g00789 259 Gene3D Mitochondrial carrier domain 34 256 IPR023395 -
Cca05g00789 259 SUPERFAMILY Mitochondrial carrier 38 246 IPR023395 -
Cca05g00789 259 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER-LIKE PROTEIN 55 255 - -
Cca05g00789 259 ProSiteProfiles Solute carrier (Solcar) repeat profile. 71 156 IPR018108 -
Cca05g00789 259 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER-LIKE PROTEIN 14 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00789 Cca-Chr5 21820266 21821134 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00789 14 255 Chloroplast and Mitochondria Gene Families AT1G72820 44.179 1.59e-82 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00789 K15121 - gmx:100797365 239.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00789 05 21820266 21821134 Cca05g00789 05 21820266 21821134 ECH
Cca03g01705 03 36140591 36142107 Cca05g00789 05 21820266 21821134 ECH