Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00785 ATGACAGACAAAAATCCAAAACCACCACCAGATACACCTGACAGTGATGATTTCACCAACCAGTGGCCTTTTGAGCTCTCTGATGAGTACTTGAATTTCGATGATCATCAATGGATGCGTGATGATCTTCATGAGTCATTTGCTTCTGTGAATGTCTCAAACCAGTCTCATCAAGCCAGTAATGTAGGTGACTTTGGAGGTAGCAGCCAGTTTGAGGGGTCTTCTATAAGCGGTGGACGTGAGAGGAGGGAAGATGTTAGAGAGAGAGTGGCATTCAAAACAAGGTCAGAGGTTGAAGTACTAGACGATGGATACAGATGGAGGAAGTACGGAAAGAAAATGGTGAAGAACAGCCCAAATCCAAGGAATTACTATAGGTGTTCAGCTGATGGATGCCCTGTGAAGAAGAGAGTGGAGAGGGATAAGGATGATCCAAGGTACGTAATAACAACCTACGAAGGCAACCACACTCATCCAAGTTCTTGCTAG 489 0.4458 MTDKNPKPPPDTPDSDDFTNQWPFELSDEYLNFDDHQWMRDDLHESFASVNVSNQSHQASNVGDFGGSSQFEGSSISGGRERREDVRERVAFKTRSEVEVLDDGYRWRKYGKKMVKNSPNPRNYYRCSADGCPVKKRVERDKDDPRYVITTYEGNHTHPSSC 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00785 162 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 11 160 IPR044810 GO:0003700
Cca05g00785 162 SUPERFAMILY WRKY DNA-binding domain 94 159 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca05g00785 162 MobiDBLite consensus disorder prediction 53 76 - -
Cca05g00785 162 MobiDBLite consensus disorder prediction 1 21 - -
Cca05g00785 162 Gene3D WRKY domain 88 154 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca05g00785 162 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 11 160 - -
Cca05g00785 162 Pfam WRKY DNA -binding domain 102 159 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca05g00785 162 MobiDBLite consensus disorder prediction 53 86 - -
Cca05g00785 162 SMART WRKY_cls 101 160 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca05g00785 162 ProSiteProfiles WRKY domain profile. 96 161 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00785 Cca-Chr5 21744728 21746499 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00785 24 160 WRKY Transcription Factor Family AT5G26170 50.641 3.54e-44 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca05g00785 WRKY 5.1e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00785 - - gmx:100796836 254.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00785 05 21744728 21746499 Cca05g00785 05 21744728 21746499 ECH