Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00780 ATGATGTCATTGTCAACCTCCATATGTTTGCACTACTTGAAAACTTTTCTTCTTTTGCGCACCCTTGTCCTTCCAATAGTTCAACCACTTTCCTTCAACATAGCTAATTTCAACGATACTGAAAGCGCAAGCTTCGTTGGATACACAGGCGTAACAAAGATTGAGAACGGAACCCTAGTTCTCAACTCACTCGTCAACAACGGAGTGGGACGAGCTATCTATGCCCAACCTCTGCGCCTCAAAAACTCTTCTAATGGAAATGTCACTCACTTTTCCACTCGTTTTTCCTTCACTATCGACGTGTCCACAAAAACCTACGGTGACGGTTTTGCCTTCTACGTGGCACCTCTTGCATACCCTATTCCGCCGTATGCAGGTGGTGGTACTCTTGGCCTATACGGTGACACGCAAAACATCGTTGCCGTCGAATTTGACACTTACGTGAACGAATATGATCCACATATGTTCCACGTGGGGATCAACAACAACTCCAAGGTGTCCCTTGCTACTTCCTGGTTTGATATTGAGAGAAACATAGGGAACATGGTGCATGCGTTAATTACTTACAATGCTTCAGCAAAACTCCTTTCTGTGTCGTGGTACTTTGATGGAAATACCTCTGGTTTTACGCCTAACAATTCTCTTTCACTCCAGATTGACCTAGCGGAATTTCTTCCAGAGTGGGTGACTTTTGGGTTTTCGGGTGCAACAACTGGTGCGGCCAGCGAGGAAAATATTATTCATTCATGGGAGTTCACTTCATCTCTGAATTCCACGCGTTCCGAGGTGAACAAAGAACATGATGGCATCGTGATTAAATACAAGTTTCAAGTCAAAGTAGTAGTTGTTGCAGTGGCTTGTTCTATTTCTTTTGTGCTCGTGGTCCTTGGTGTTTCTTGGTTGATCCTGTTCATCGTCAAGAAAAGAAGCACCGAGGGTGGTTATGATGACTTGGATAGAGGAGCCATGCCTAGAAGGTTTGGTTATAAGGAATTAGTCGCCGCCACCAACGGGTTTGCAGATGATAGAAGGCTCGGAGAAGGTGGCTCTGGAGAAGTTTACAAAGGGTTTCTGAGTGACTTAGGGCGCGTGGTTGCTGTGAAAAGGATTTTTTCTAATGTTGAAGACTCGGAGAACATATTTACGAACGAGGTGAAGATTATAAGTCGTCTTATACATAGAAACCTTGTGCAATTCATGGGGTGGTGCCACGAAGAAGGGGAGTTGTTACTGGTTTTTGAGTACATGACTAATGGAAGCCTTGACACTCACGTCTTTGGAACTAGAAGAACTTTGACATGGAGTGTGAGATACAAGATAGCGTTAGGTGTGGCTAGAGCAATTCGTTATCTTCATGAAGACGCAGAGCAGTGTGTTCTTCATAGGGATATTAAGTCATCTAATGTTTTGTTGGACACAGATTTTAATACTAAGCTTAGTGACTTTGCGATGGCAAAGTTGGTGGATCCAAGATTGAGGACTCAGAAGACAAAGGTGGTGGGGACATATGGGTACCTGGCTCCGGAATATGTAAAGGAAGGTAGGGCTAGCAAGGAATCAGACATGTATGGTTTTGGGGTTGTGGCTTTGGAGATAGCATGTGGAAGGAGGACTTATCAGGACGGGGAGAATAATCATGTGCCTTTAACGAATTGGGCGTGGAAACACTATGTGGATGGGAATATTCTGAATGCTGCTGATGAGGGATTGAATAGGGATTATGATGTGAATGAAATGATATGCTTGCTTACTGTGGGACTGTGGTGTACCCTACAAGACAACAAGAAGAGGCCAAAGGCAGAACAAGTTATTAATGTTCTTAAGCAAGAAGCGCCGTTGCCAGTGCTTTCTATATGA 1857 0.4405 MMSLSTSICLHYLKTFLLLRTLVLPIVQPLSFNIANFNDTESASFVGYTGVTKIENGTLVLNSLVNNGVGRAIYAQPLRLKNSSNGNVTHFSTRFSFTIDVSTKTYGDGFAFYVAPLAYPIPPYAGGGTLGLYGDTQNIVAVEFDTYVNEYDPHMFHVGINNNSKVSLATSWFDIERNIGNMVHALITYNASAKLLSVSWYFDGNTSGFTPNNSLSLQIDLAEFLPEWVTFGFSGATTGAASEENIIHSWEFTSSLNSTRSEVNKEHDGIVIKYKFQVKVVVVAVACSISFVLVVLGVSWLILFIVKKRSTEGGYDDLDRGAMPRRFGYKELVAATNGFADDRRLGEGGSGEVYKGFLSDLGRVVAVKRIFSNVEDSENIFTNEVKIISRLIHRNLVQFMGWCHEEGELLLVFEYMTNGSLDTHVFGTRRTLTWSVRYKIALGVARAIRYLHEDAEQCVLHRDIKSSNVLLDTDFNTKLSDFAMAKLVDPRLRTQKTKVVGTYGYLAPEYVKEGRASKESDMYGFGVVALEIACGRRTYQDGENNHVPLTNWAWKHYVDGNILNAADEGLNRDYDVNEMICLLTVGLWCTLQDNKKRPKAEQVINVLKQEAPLPVLSI 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00780 618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672|GO:0006468
Cca05g00780 618 ProSitePatterns Protein kinases ATP-binding region signature. 345 368 IPR017441 GO:0005524
Cca05g00780 618 Gene3D - 28 270 - -
Cca05g00780 618 CDD lectin_legume_LecRK_Arcelin_ConA 30 256 IPR001220 GO:0030246
Cca05g00780 618 SUPERFAMILY Concanavalin A-like lectins/glucanases 28 255 IPR013320 -
Cca05g00780 618 ProSiteProfiles Protein kinase domain profile. 339 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00780 618 Gene3D Transferase(Phosphotransferase) domain 1 416 616 - -
Cca05g00780 618 ProSitePatterns Legume lectins beta-chain signature. 140 146 IPR019825 -
Cca05g00780 618 Pfam Legume lectin domain 30 262 IPR001220 GO:0030246
Cca05g00780 618 Gene3D Phosphorylase Kinase; domain 1 324 415 - -
Cca05g00780 618 SUPERFAMILY Protein kinase-like (PK-like) 322 607 IPR011009 -
Cca05g00780 618 SMART serkin_6 339 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00780 618 ProSitePatterns Legume lectins alpha-chain signature. 225 234 IPR000985 -
Cca05g00780 618 PANTHER - 29 617 - -
Cca05g00780 618 PANTHER LECTIN RECEPTOR KINASE 29 617 - -
Cca05g00780 618 Pfam Protein kinase domain 340 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00780 Cca-Chr5 21652984 21654921 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00780 22 616 Receptor kinase-like Gene Family AT5G10530 44.283 1.17e-160 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Cca05g00780 Pkinase 8.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00780 - - gmx:100800327 923.309