Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00778 ATGATGTCATTGTCAACCTCCATATGTTTGCACTACTTGAAAACTTTTCTTCTTTTGCGCACCCTTGTCCTTCCAATAGTTCAACCACTTTCCTTCAACATAGCTAATTTCAACGATACTGAAAGCGCAAGCTTCGTTGGATACACAGGCGTAACAAAGATTGAGAACGGAACCCTAGTTCTCAACTCACTCGTCAACAACGGAGTGGGACGAGCTATCTATGCCCAACCTCTGCGCCTCAAAAACTCTTCTAATGGAAATGTCACTCACTTTTCCACTCGTTTTTCCTTCACTATCGACGTGTCCACAAAAAACAACTACGGTGACGGCTTTGCCTTCTACGTGGCACCTCTTGCATACCCTATTCCGCCTAATTCAGGTGGTGGTGGTCTTGGCCTATACGGTGACACGCAAAACATTGTTGCCGTCGAATTTGACACTTTCGTAAACGAATTAAGTGATCCACAAATGCGCCACGTGGGGATCAACAACAACTCCTTGGTGTCCCTTGCTACTTCCTTGTTTGATATTGAGAGCAACATAGGGAACATGGTGCATGCGTTGATTACTTACAATGCTTCAGCAAAACTACTTTCTGTGTCGTGGTACTTTGATGGAAATACCACTGGTTTTACGCCTAACAATTCTCTTTCACACCAGATTGACCTAGCGGAATTTCTTCCAGAGTGGGTGACTTTTGGTTTTTCGGGTGCAACCGGTGCGTCCAATGAGGAAAATATTATTCATTCATGGGAGTTCACTTCATCATTGAACACCACGCGTTTGGAGGTGAACAAAGAACATGATGGCATCGTGATTAAATACAAGTTTCAAGTCAAAGTAGTAGTTGTTGCAGTGGCTTGTTCTATTTCTTTTGTGCTCGTGGTCCTTGGTGTTTCTTGGTTGATCTTGTTCATCGTCAAGAAAAGAAGTACCGAGGGTGGTTTTGATGACTTGGATAGAGGAGCCATGCCTAGAAGGTTTGGTTATAAGGAATTAGTCGCCGCCACCAACGGGTTTGCAGATGATAGAAGGCTCGGAGAAGGTGGCTCTGGAGAAGTTTACAAAGGGTTTCTGAGTGACTTAGGGCGCGTGGTTGCTGTGAAAAGGATTTTTTCTAATGTTGAAGACTCGGAGAACATATTTACGAACGAGGTGAAGATTATAAGTCGTCTTATACATAGAAACCTTGTGCAATTCATGGGGTGGTGCCACGAAGAAGGGGAGTTGTTACTGGTTTTTGAGTACATGACTAATGGAAGCCTTGACACTCACGTCTTTGGAACTAGAAGAACTTTGACATGGGGTGTGAGATACAAGATAGCGTTAGGTGTGGCTAGAGCACTTCGTTATCTTCATGAAGACGCGGAGCAGTGTGTTCTTCATAGGGATATTAAGTCATCTAATGTTTTGTTGGACACAGATTTTAATACTAAACTTAGTGACTTTGGGATGGCAAAGTTGGTGGATCCAAGATTGAGGACTCAGAAGACAAAGGTGGTGGGGACATATGGTTACCTGGCTCCGGAATATGTAAAGGAAGGCAGGGCTAGCAAGGAATCAGACATGTATGGTTTTGGGGTTGTGGCTTTGGAGATAGCATGTGGAAGGAGGACTTATCAGGATGGGGAGAATAATCATGTGCCTTTGACGAATTGGGCATGGAAACACTATGTGGATGGGAATATTTTGAATGCTGCTGATGAGGGATTGAATAGGGATTTTGATGTGAATGAAATGATATGCTTGCTTACTGTGGGACTGTGGTGTACCCTACAAGACCACAAGAAAAGGCCAAAGGCAGAACAGGTTGTTTGTCATGGCCGAGTACCCATTTGGCATGCTCATTGGTCGAGGTATTCGGCCTTCCTAGCTCCCAAGTATTTCGTCCTTCTTATTGCTGAGAGTAGTGGGTGTTCCATGGGTGTGATTTTTTACCTATTCAGTCTCACTTCTGGCCGAAAGGGTTGTTCGGATGCTTTGGGAGCCGAGGGGTTGCTCGGCCACAACGAGGGCCTAAGGGGTGTTTGGTTGTGGCGAGGGCCAGAAGGGGTGGAGTGCAGCCTGACTAGTACACTACGCCCCTAA 2088 0.4511 MMSLSTSICLHYLKTFLLLRTLVLPIVQPLSFNIANFNDTESASFVGYTGVTKIENGTLVLNSLVNNGVGRAIYAQPLRLKNSSNGNVTHFSTRFSFTIDVSTKNNYGDGFAFYVAPLAYPIPPNSGGGGLGLYGDTQNIVAVEFDTFVNELSDPQMRHVGINNNSLVSLATSLFDIESNIGNMVHALITYNASAKLLSVSWYFDGNTTGFTPNNSLSHQIDLAEFLPEWVTFGFSGATGASNEENIIHSWEFTSSLNTTRLEVNKEHDGIVIKYKFQVKVVVVAVACSISFVLVVLGVSWLILFIVKKRSTEGGFDDLDRGAMPRRFGYKELVAATNGFADDRRLGEGGSGEVYKGFLSDLGRVVAVKRIFSNVEDSENIFTNEVKIISRLIHRNLVQFMGWCHEEGELLLVFEYMTNGSLDTHVFGTRRTLTWGVRYKIALGVARALRYLHEDAEQCVLHRDIKSSNVLLDTDFNTKLSDFGMAKLVDPRLRTQKTKVVGTYGYLAPEYVKEGRASKESDMYGFGVVALEIACGRRTYQDGENNHVPLTNWAWKHYVDGNILNAADEGLNRDFDVNEMICLLTVGLWCTLQDHKKRPKAEQVVCHGRVPIWHAHWSRYSAFLAPKYFVLLIAESSGCSMGVIFYLFSLTSGRKGCSDALGAEGLLGHNEGLRGVWLWRGPEGVECSLTSTLRP 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00778 695 SUPERFAMILY Protein kinase-like (PK-like) 324 611 IPR011009 -
Cca05g00778 695 Gene3D - 28 270 - -
Cca05g00778 695 Gene3D Phosphorylase Kinase; domain 1 325 416 - -
Cca05g00778 695 Pfam Protein kinase domain 341 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00778 695 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672|GO:0006468
Cca05g00778 695 ProSitePatterns Legume lectins beta-chain signature. 141 147 IPR019825 -
Cca05g00778 695 ProSitePatterns Protein kinases ATP-binding region signature. 346 369 IPR017441 GO:0005524
Cca05g00778 695 ProSitePatterns Legume lectins alpha-chain signature. 227 236 IPR000985 -
Cca05g00778 695 CDD lectin_legume_LecRK_Arcelin_ConA 30 257 IPR001220 GO:0030246
Cca05g00778 695 SMART serkin_6 340 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00778 695 Pfam Legume lectin domain 30 261 IPR001220 GO:0030246
Cca05g00778 695 SUPERFAMILY Concanavalin A-like lectins/glucanases 28 263 IPR013320 -
Cca05g00778 695 Gene3D Transferase(Phosphotransferase) domain 1 417 611 - -
Cca05g00778 695 PANTHER LECTIN RECEPTOR KINASE 29 605 - -
Cca05g00778 695 PANTHER - 29 605 - -
Cca05g00778 695 ProSiteProfiles Protein kinase domain profile. 340 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00778 Cca-Chr5 21571698 21574377 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00778 22 614 Receptor kinase-like Gene Family AT5G10530 43.871 1.78e-159 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Cca05g00778 Pkinase 3.7e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00778 - - gmx:100800327 911.753