Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00772 ATGGGAACAAATCTCAGCATTCCCAAAACTGAAAAGTCTTCCGAGGATGGTGAAAATGACCATCTTAGATATGGTTTATCATCTATGCAAGGCTGGCGTGGAACAATGGAAGATGCACATGCTGCACATCTTGATCTGGATGAGTCCACTTCCTTTTTTGGTGTTTATGATGGACATGGAGGTAAGGTGGTTGCAAAGTTTTGTGCCAAGTATCTTCACCAGCAGGTGCTCAAGAATGAAGCATACATAGCTGGAGATATAGGAACTTCTCTTCAGGAATCATTTTTCAGAATGGACGAGATGATGCGTGGCCAAAGGGGATGGAGGGAATTAGCAGTTTTGGGTGATAAGATAAACAAGTTTAACGGTAAGATAGAAGGGTTGATTTGGTCTCCACGTAGCAGAGATGCTAAGGACCAAGATGATAGTTGGGCCTTTGAGGAGGGTCCCCATTCTAATTTTGCTGGACCAACTTCAGGAAGCACTGCCTGTGTTGCAATTATTAGAAACAACCAACTTTTTGTAGCAAATGCCGGTGATTCACGTTGTGTAATATCTAGGAAGGGTCAGGCGTATGATTTGTCTATAGATCATAAACCTGATCTTGAGATTGAAAAGGAAAGAATCATAAAAGCTGGTGGTTTTATTCATGCAGGAAGAGTTAATGGGACTTTAAGCCTTGCAAGGGCTATAGGTGACGTGGAATTTAAGCAGAATAAATTCCTTTCTGCTGAAAAACAAATTGTGACAGCCAATCCAGACATAAATACTGTTGAACTTTGTGATGAGGATGAATTTTTAGTGCTGGCTTGTGATGGCATATGGGATTGTTTGTCAAGTCAACAATTGGTAGATTTTGTACATCAACAACTTCTCTTGGAAACTAAACTTTCTGGGGTCTGTGAAAGAGTGCTGGATCGGTGTTTGGCACCAACAATACTTGTTGGTGATGGCTGTGATAACATGACTATGATTTTGGTTCAGTTTAAAAAACAGGCCAAGTCCAGTGCACCAGCATTAGAGCAACCCTCTTCAAATGACCCAGCTACATCTGAACTACAAGAGTAG 1068 0.4129 MGTNLSIPKTEKSSEDGENDHLRYGLSSMQGWRGTMEDAHAAHLDLDESTSFFGVYDGHGGKVVAKFCAKYLHQQVLKNEAYIAGDIGTSLQESFFRMDEMMRGQRGWRELAVLGDKINKFNGKIEGLIWSPRSRDAKDQDDSWAFEEGPHSNFAGPTSGSTACVAIIRNNQLFVANAGDSRCVISRKGQAYDLSIDHKPDLEIEKERIIKAGGFIHAGRVNGTLSLARAIGDVEFKQNKFLSAEKQIVTANPDINTVELCDEDEFLVLACDGIWDCLSSQQLVDFVHQQLLLETKLSGVCERVLDRCLAPTILVGDGCDNMTMILVQFKKQAKSSAPALEQPSSNDPATSELQE 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00772 355 Pfam Protein phosphatase 2C 23 103 IPR001932 -
Cca05g00772 355 Pfam Protein phosphatase 2C 140 311 IPR001932 -
Cca05g00772 355 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169
Cca05g00772 355 SMART PP2C_4 13 327 IPR001932 -
Cca05g00772 355 MobiDBLite consensus disorder prediction 1 20 - -
Cca05g00772 355 SUPERFAMILY PP2C-like 4 330 IPR036457 -
Cca05g00772 355 PANTHER PROTEIN PHOSPHATASE 2C 1 340 IPR015655 GO:0004722|GO:0006470
Cca05g00772 355 CDD PP2Cc 23 329 IPR001932 -
Cca05g00772 355 ProSiteProfiles PPM-type phosphatase domain profile. 23 329 IPR001932 -
Cca05g00772 355 MobiDBLite consensus disorder prediction 335 355 - -
Cca05g00772 355 PANTHER PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED 1 340 - -
Cca05g00772 355 Gene3D - 1 330 IPR036457 -
Cca05g00772 355 SMART PP2C_SIG_2 28 329 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00772 Cca-Chr5 21433710 21440987 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00772 1 352 PP2C-type Phosphatase Gene Family AT2G25070 74.148 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00772 K17499 - gmx:100793667 646.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00772 05 21433710 21440987 Cca05g00772 05 21433710 21440987 ECH
Cca05g00772 05 21433710 21440987 Cca03g01640 03 35417431 35423249 PCT