Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00771 ATGGCGCCGAAGAAGCCGAGAGTGACGAGGAACCCCGAATTGATCAGGGGAATCGGGAAGTACTCGAGGTCGCAGATGTACCACAAGAGGGGCATCTGGGCCATCAAGGCCAAGCACGGTGGCGCTTTCCCTCGTCACGATCCCAAGCCCAAGCCCCACGCTCCGGCCCAGAAGCCGCCCAAGTTTTACCCCGCCGACGATGTCAAGAGACCCCTCGTCAACAAGCACAAGCCTAAGCCAGCCAAACTCAGGGCTAGTATTACTCCTGGGACAGTTTTGATCTTGCTTGCTGGGAGATTCAAGGGAAAGAGGGTTGTTTTCCTGAAGCAGCTTCCATCTGGGTTGCTTCTTGTAACAGGTCCCTTTAAGATCAATGGAGTTCCTCTCCGAAGGGTGAACCAATCATATGTCATTGGTACATCTACAAAGGTGGATATCTCTGGTGTCAATGTTGATAAATTTGATGACAAGTACTTTGCCAAGGAAGCCAAGAAAAAGAAAACCAAGGGAGAAGGCGAGTTCTTTGAGGCAGAGAAGGAGGAGAAAAATGTGCTTCCCCAAGAAAAGAAAGATGACCAAAAAACTGTGGACACTGCTTTGTTAAAGGCCATTGAGAGTGTTCCAGATCTGAAGTCTTACTTGGGTGCTAGGTTTTCTTTGAAGGCAGGAATGAAGCCCCATGAGTTAGTCTTCTAG 696 0.4943 MAPKKPRVTRNPELIRGIGKYSRSQMYHKRGIWAIKAKHGGAFPRHDPKPKPHAPAQKPPKFYPADDVKRPLVNKHKPKPAKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEAKKKKTKGEGEFFEAEKEEKNVLPQEKKDDQKTVDTALLKAIESVPDLKSYLGARFSLKAGMKPHELVF 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00771 231 Pfam Ribosomal protein L6e 124 231 IPR000915 GO:0003735|GO:0005840|GO:0006412
Cca05g00771 231 MobiDBLite consensus disorder prediction 39 68 - -
Cca05g00771 231 CDD KOW_RPL6 79 231 IPR041997 -
Cca05g00771 231 SUPERFAMILY Translation proteins SH3-like domain 85 171 IPR008991 -
Cca05g00771 231 Pfam Ribosomal protein L6, N-terminal domain 4 59 IPR005568 GO:0003735|GO:0005840|GO:0006412
Cca05g00771 231 MobiDBLite consensus disorder prediction 40 54 - -
Cca05g00771 231 PANTHER 60S RIBOSOMAL PROTEIN L6 1 231 IPR000915 GO:0003735|GO:0005840|GO:0006412
Cca05g00771 231 Gene3D - 85 169 IPR014722 -
Cca05g00771 231 PANTHER 60S RIBOSOMAL PROTEIN L6 1 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00771 Cca-Chr5 21420323 21422994 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00771 4 231 Cytoplasmic Ribosomal Protein Gene Family AT1G74050 80.702 1.27e-120 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00771 K02934 - gmx:100784101 387.111