Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00756 ATGGTCGTTCAACTCTTCAACATACCAATCATAATGGATGAGAAGGTGGAAACTCTTAAAGAGGAGTTACAACGATTAAGAGAGGAGAATAACACCCTAAGATTGATGCTTGAAGTTCTGAACAGCAAGTGCACAAAGCTTGAGACCCATGTACAAGAGACAAACAAGGCAAAACACGAGGGCTTGAGTTCTTCAAATCAAATAGGGTCAGTAACAGTACCTATCCTTGATACAAACAAGAGACCGAGACTAGAGTTTCCCACAGCAAAAAAGCCATTACAAATCTTTGTCAGAACACACCCTAAGGATGATAGTTTGATAGTAAAAGATGGCTATCAGTGGAGGAAGTATGGGCAGAAGGTCACCAAAGACAATGCTTCACCTCGAGCTTACTTCAGGTGCTCTATGGCTCCTATTTGCCCAGCCAAAAAGAAGGTGCAAAGATGCATACATGACAAGTCTATTCTTGTTGCAACTTATGATGGAGAGCACAACCATGGTGCCATTCATGAATCATCTTCATCCACACAAAAACACAACCATGGTGTCATTCATGAGTCATCTTCATCCACACCAAAAGGGTCACCAGTGGTTAATAAGTTGCCTCTGACAAGCATACCAAATGATAAAGAAGCCATGAACATTGACTTGGCTCTTTTTGGGTGGTCTCAAACAGATACGAGACATTGTGAAGATGTCATGCAACAAAAAGACCAAGGAAGCAACATCAAAATTGAAGAATATGTAAGTTCTCTAGTCAAAGATCCTGGCTTCACCTTGTCATTAGCTGAAGCAGTTGCCCGCACCATCACTGGTCAGCAAAAGCAACAAGGTCTAAACCTCAATTTGGATCTTCAGGAAGAGTGA 867 0.4164 MVVQLFNIPIIMDEKVETLKEELQRLREENNTLRLMLEVLNSKCTKLETHVQETNKAKHEGLSSSNQIGSVTVPILDTNKRPRLEFPTAKKPLQIFVRTHPKDDSLIVKDGYQWRKYGQKVTKDNASPRAYFRCSMAPICPAKKKVQRCIHDKSILVATYDGEHNHGAIHESSSSTQKHNHGVIHESSSSTPKGSPVVNKLPLTSIPNDKEAMNIDLALFGWSQTDTRHCEDVMQQKDQGSNIKIEEYVSSLVKDPGFTLSLAEAVARTITGQQKQQGLNLNLDLQEE 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00756 288 ProSiteProfiles WRKY domain profile. 103 169 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca05g00756 288 MobiDBLite consensus disorder prediction 166 198 - -
Cca05g00756 288 MobiDBLite consensus disorder prediction 169 198 - -
Cca05g00756 288 SMART WRKY_cls 108 168 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca05g00756 288 Pfam WRKY DNA -binding domain 109 166 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca05g00756 288 PANTHER WRKY TRANSCRIPTION FACTOR 49 12 270 - -
Cca05g00756 288 Coils Coil 12 57 - -
Cca05g00756 288 Gene3D WRKY domain 94 168 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca05g00756 288 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 12 270 IPR044810 GO:0003700
Cca05g00756 288 SUPERFAMILY WRKY DNA-binding domain 104 167 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00756 Cca-Chr5 20885279 20888104 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00756 13 277 WRKY Transcription Factor Family AT1G80840 35.764 3.67e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca05g00756 WRKY 3.3e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00756 - - ccaj:109791737 546.969