Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00754 ATGGTTCTCCAGAACGATATTGATTTGCTGAATCCCCCAGCTGAGTTGGAAAAGAGAAAGCACAAGCTCAAACGTCTTGTTCAGTCCCCAAATTCGTTCTTCATGGATGTTAAGTGCCAGGGTTGCTTTAACATAACCACCGTGTTTAGCCACTCTCAGACAGTTGTGGTTTGCGGTAATTGCCAGACTGTGTTGTGCCAACCAACGGGTGGACGGGCGAGGCTAACTGAAGGGTGCTCTTTTAGGAAGAAGGGAGACTAA 261 0.4751 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRKKGD 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00754 86 PANTHER 40S RIBOSOMAL PROTEIN S27-RELATED 2 85 - -
Cca05g00754 86 PANTHER 40S RIBOSOMAL PROTEIN S27 2 85 IPR000592 GO:0003735|GO:0005840|GO:0006412
Cca05g00754 86 Hamap 30S ribosomal protein S27e [rps27e]. 24 84 IPR000592 GO:0003735|GO:0005840|GO:0006412
Cca05g00754 86 Pfam Ribosomal protein S27 30 84 IPR000592 GO:0003735|GO:0005840|GO:0006412
Cca05g00754 86 ProSitePatterns Ribosomal protein S27e signature. 38 70 IPR000592 GO:0003735|GO:0005840|GO:0006412
Cca05g00754 86 Gene3D - 5 85 IPR023407 -
Cca05g00754 86 SUPERFAMILY Zn-binding ribosomal proteins 30 84 IPR011332 GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00754 Cca-Chr5 20831285 20832401 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00754 1 86 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 95.349 8.03e-60 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00754 K02978 - gmx:100499804 177.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00754 05 20831285 20832401 Cca08g01029 08 26075966 26077883 PCT