Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00741 ATGGATATGGACAGCATTGACTGTGTGTCGTTCTCTGATGGCACGGACGAGGATGAGATCCAACACCATACTCTACATCCTCATTTCCACTCTGAGTTTTCTTCTAACAAGCCTCGCAATGGCGGTGCTAACAACAACAATGTTATGGGAGCCACGGCCATTGCTCCTGCAACCGGCGTTCATGAGTTGCTAGAATGCCCTGTTTGCACCAATTCAATGTACCCCCCAATTCACCAGTGTCACAATGGGCATACATTGTGTTCCACATGCAAAACAAGGGTGCACAATCGATGTCCCACTTGTAGACAAGAGCTTGGTGATATTAGGTGTCTGGCACTGGAGAAAGTGGCTGAATCACTAGAGTTACCATGCAAGTACTACTCCCTTGGATGTCCTGAAATCTTTCCATACTACAGCAAGCTTAAGCATGAGACAGTATGCAATTTTAGACCATACAATTGTCCTTATGCTGGATCAGAGTGCTCTGTTGTGGGGGACATTCCCTTTCTTGTTGCACATTTGAGGGATGATCATAAGGTGGACATGCACACAGGATGCACCTTCAACCATCGTTATGTGAAATCAAATCCACGTGAAGTAGAGAATGCAACTTGGATGCTCACTGTATTTCATTGTTTTGGCCAATACTTCTGCCTTCACTTTGAAGCTTTCCAGCTTGGCATGGCACCTGTTTACATGGCATTCCTTCGTTTTATGGGTGACGAGAACGAGGCTCGGAACTACAGTTATAGCCTTGAGGTTGGGGCAAATGGCCGGAAGCTCATTTGGGAGGGTACACCACGAAGTATTCGTGATAGCCACCGCAAAGTCAGGGACAGCCACGATGGTCTCATTATTCAACGGAACATGGCCTTGTTTTTCTCTGGTGGGGATAAGAAGGAGCTGAAACTAAGAGTCACAGGAAGAATATGGAAGGAACAACAGAATCCTGATGCTGGGGTGTACATACCAAATCTTTGCAGCTAG 987 0.463 MDMDSIDCVSFSDGTDEDEIQHHTLHPHFHSEFSSNKPRNGGANNNNVMGATAIAPATGVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHETVCNFRPYNCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDKKELKLRVTGRIWKEQQNPDAGVYIPNLCS 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00741 328 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 319 - -
Cca05g00741 328 SUPERFAMILY TRAF domain-like 119 311 - -
Cca05g00741 328 SUPERFAMILY RING/U-box 54 108 - -
Cca05g00741 328 ProSiteProfiles Zinc finger SIAH-type profile. 119 179 IPR013010 GO:0008270
Cca05g00741 328 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 319 - -
Cca05g00741 328 CDD RING-HC_SIAHs 64 102 - -
Cca05g00741 328 MobiDBLite consensus disorder prediction 28 47 - -
Cca05g00741 328 CDD Sina 180 308 - -
Cca05g00741 328 ProSiteProfiles Zinc finger RING-type profile. 66 102 IPR001841 -
Cca05g00741 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 118 IPR013083 -
Cca05g00741 328 Pfam Seven in absentia protein family 108 307 IPR018121 GO:0005737|GO:0006511|GO:0007275
Cca05g00741 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 172 IPR013083 -
Cca05g00741 328 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 173 307 IPR008974 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00741 Cca-Chr5 20101551 20108518 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00741 57 314 C3H Transcription Factor Family AT2G41980 82.171 3.14e-164 458
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00741 K04506 - zju:107414770 640.573