Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00738 ATGGGTGGAGCTTTCAAAGACAAGTTGGGTGAAGGAGGATATGGCTCTGTGTTCAAAGGAAAGTTGCGTAGTGGGCCACATGTTGCAATTAAAATGTTAGGTAAATCAAAAGGAAATGGACAAGATTTTATTAGTGAAGTTGCAACAATCGGAAGAATACATCATCAGAATATAGTGCAATTAATTGGATTTTGTGTTGAGGGGTCAAAACGTACTCTTGTTTATGAATTCATGCCAAATGGATCTCTTGATAAATTTATTTTTTCCAAAGATGGAAGTGTAAATTTAAGTTATGATAAAATATATAATATATCAATTGGAGTGGCTCGTGGGATTGCTTATCTCCATCATGGGTGTGAGATGCAAATTTTGCATTTTGATATCAAGCCCCACAACATCCTGTTGGATGAAAATTTCAATCCAAAAGTCTCTGACTTTGGGCTGGCAAAGTTATACCCAATAGATAATAACATTGTCACAATGACAGGTGTAAGAGGGACAATTGGGTATATGGCTCCAGAATTATTTTATAAAAATATTGGGGGGATATCCCATAAAGCTGATGTTTATAGCTTTGGAATGCTTTTGATGGAGATGGCAAGTAAGAGGAAAAACCTAAATCCTAATGCAGAGCATTCAAGCCAACTCTACTTTCCATTTTGGATTTATAAAAATCTTGAGGAAGAGAAAGATATAGAAATGGAAGATGTCACAAAAGAGGAAAAGGAAATAGCAAAAAAGATGTTCATGATTGCACTTTGGTGTATACAATTGAAACCAAATGATCGTCCCTCAATGAACAAAGTAGTGGAAATGTTAGAAGGAGACATTGGTAGCCTAGAAATACCTCCAAAGCCTACACTATATCCGCATGAAACAATGACAAGGGATAAAAGAATATGA 903 0.3555 MGGAFKDKLGEGGYGSVFKGKLRSGPHVAIKMLGKSKGNGQDFISEVATIGRIHHQNIVQLIGFCVEGSKRTLVYEFMPNGSLDKFIFSKDGSVNLSYDKIYNISIGVARGIAYLHHGCEMQILHFDIKPHNILLDENFNPKVSDFGLAKLYPIDNNIVTMTGVRGTIGYMAPELFYKNIGGISHKADVYSFGMLLMEMASKRKNLNPNAEHSSQLYFPFWIYKNLEEEKDIEMEDVTKEEKEIAKKMFMIALWCIQLKPNDRPSMNKVVEMLEGDIGSLEIPPKPTLYPHETMTRDKRI 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00738 300 Coils Coil 223 243 - -
Cca05g00738 300 PIRSF ILK 4 279 - -
Cca05g00738 300 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 1 296 - -
Cca05g00738 300 Pfam Protein kinase domain 6 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00738 300 SUPERFAMILY Protein kinase-like (PK-like) 6 274 IPR011009 -
Cca05g00738 300 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Cca05g00738 300 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 296 IPR045874 GO:0004672
Cca05g00738 300 Gene3D Transferase(Phosphotransferase) domain 1 79 279 - -
Cca05g00738 300 SMART serkin_6 3 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00738 300 Gene3D Phosphorylase Kinase; domain 1 9 78 - -
Cca05g00738 300 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Cca05g00738 300 CDD STKc_IRAK 9 275 - -
Cca05g00738 300 ProSiteProfiles Protein kinase domain profile. 3 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00738 Cca-Chr5 19927920 19928822 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00738 4 295 Receptor kinase-like Gene Family AT1G66910 51.852 1.95e-107 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Cca05g00738 Pkinase 1.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00738 - - gmx:100781031 541.962