Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00729 ATGGGGAAAAAAGGAGGCAGCTGGTTCTCATCGGTAAAGAAAGTTTTCAAGTCGTCGTCTAAAGACTCACCCCTGCCTGAGAAGAAGAAGGAGAAGGCACAGAAATCGGAGCATGTAGTGGTAGAGGTGGTGTCTTTTGAACAGTTTTTATCAACAAGTTCTCCAAAAAATGTGAGCAATGAAGAGAGTAGGACATCAACGCCGGGGACTGCGGCAAGAGTTGTAAGATTGGCAGGTTATGGACGCCACACCAAAGAAGAAAGAGCTGCCACACTCATTCAATCATACTATAGAGGATACCTAGCTCGTCGAGCACTGCGAGCATTGAAGGGATTAGTGAGGCTGCAAGCATTGGTGAGGGGACATAATGTGCGAAAGCAAGCACAGATGACAATGCGTTGCATGCAAGCCCTAGTGAGGGTGCAGGCACGAGTAAGGGCTCGTCGACTCCAATTGAGCCACGTGGAAGAAAAACAACAATTTGAGAAAAAGAAGGAAAagcccgagctcgaacccgagcccatgcccatgcccatgagcccCATGAGAAGAACAAAAATTAATGATTGGGACAGTAGGCGTCAAAGCAGCCACAAAATTAAAGAAAACGAATTGAGGAAACATGAAGCGGTAATGAAGAGGGGGAGAGCTCTTTCATATGCTTTCGACTACCAACAGCAACAACAGAAGCAATTTTTGCTGGCAGACAATGATCTAGGAGCAACCTATGAATATGATCGTGAAAAGGCCCAATGGGGTTGGAACTGGTTGGAGAATTGGATGTCATCGCAACCATGCAGTGTTAAGAACGTGGGGTTGCATGAGACCTCTTACAGGACTCTTACTTCTACAACATCAACTACAACAGATAACATGTCTGAGAAGACTATGGAAATGGACATGCTTGCAACTGTAGGACCAACCAACATCAGCCCCATCAACCAAGACTTTATAGATTCAAGCCCAGTTTTCAACAGGCACCATCAGATACCTCCCAGCCCAAATAGACCTAGCTATATGGCCCCTACTCAGTCTACAAAGGCCAAGGTTCGGGCCCAAGGGCCATCCAAGATGCGGGCTTCACCTGAGCCTCAGTGGAACTTCTCAACCAAGGAAGCCTCCACCTGTGACTCATCTAGTTCAGGTGGAGGAATTGCCGGTTACCAATTTCCAAGGAGCCCAGGCCCAAAAATGAATGCCACTCGTTCTCAGTCTAGAAGGATTGTGGATAAAAGTGAGGATTGGGCCCTTCCACTTGGAGCCCATGGTTGGATATAG 1278 0.4515 MGKKGGSWFSSVKKVFKSSSKDSPLPEKKKEKAQKSEHVVVEVVSFEQFLSTSSPKNVSNEESRTSTPGTAARVVRLAGYGRHTKEERAATLIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRLQLSHVEEKQQFEKKKEKPELEPEPMPMPMSPMRRTKINDWDSRRQSSHKIKENELRKHEAVMKRGRALSYAFDYQQQQQKQFLLADNDLGATYEYDREKAQWGWNWLENWMSSQPCSVKNVGLHETSYRTLTSTTSTTTDNMSEKTMEMDMLATVGPTNISPINQDFIDSSPVFNRHHQIPPSPNRPSYMAPTQSTKAKVRAQGPSKMRASPEPQWNFSTKEASTCDSSSSGGGIAGYQFPRSPGPKMNATRSQSRRIVDKSEDWALPLGAHGWI 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00729 425 MobiDBLite consensus disorder prediction 156 184 - -
Cca05g00729 425 Pfam IQ calmodulin-binding motif 87 107 IPR000048 GO:0005515
Cca05g00729 425 Pfam IQ calmodulin-binding motif 113 128 IPR000048 GO:0005515
Cca05g00729 425 MobiDBLite consensus disorder prediction 156 172 - -
Cca05g00729 425 SMART iq_5 108 129 IPR000048 GO:0005515
Cca05g00729 425 SMART iq_5 85 107 IPR000048 GO:0005515
Cca05g00729 425 MobiDBLite consensus disorder prediction 1 37 - -
Cca05g00729 425 Gene3D - 83 137 - -
Cca05g00729 425 ProSiteProfiles IQ motif profile. 86 114 IPR000048 GO:0005515
Cca05g00729 425 PANTHER IQ-DOMAIN 21 1 397 - -
Cca05g00729 425 MobiDBLite consensus disorder prediction 352 408 - -
Cca05g00729 425 PANTHER IQ-DOMAIN 5-RELATED 1 397 - -
Cca05g00729 425 MobiDBLite consensus disorder prediction 20 37 - -
Cca05g00729 425 Pfam Protein of unknown function (DUF4005) 322 387 IPR025064 -
Cca05g00729 425 ProSiteProfiles IQ motif profile. 110 137 IPR000048 GO:0005515
Cca05g00729 425 MobiDBLite consensus disorder prediction 360 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00729 Cca-Chr5 19695924 19702301 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00729 1 402 IQD Protein Family AT3G49260 43.450 2.01e-91 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00729 - - ccaj:109813058 580.867