Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00722 ATGGACACAACTCAGTGGGCACAGGGTATTGGAGTTGTTAACCCTATGGAAGGTAATTCAAAGCCTCCAATTATGGAGAAAAGGGCAAGGCCACAGAAGGATCAAGCTTTAAACTGCCCAAGGTGCAATTCAACAAACACCAAATTCTGCTACTACAATAACTATAGCCTCTCCCAACCAAGGTACTTTTGCAAGACTTGTAGAAGGTATTGGACAGAGGGAGGCTCTTTGAGAAATGTTCCAGTGGGTGGAGGCTCAAGAAAGAACAAAAGACCAACACCTGcatcctcatcatcatcaccatcaactccatcatcaACTAAGAAGTTTCCTGATCTGGCAACCCCACAAAATTTCCCTCAGAATTCTTCTCAAACCCCAAAGATCCACCAAGGCCAAGATCTTAACCTAGCATATCCACCGGTTGAGGACTACAGCACCATATCTAAATTCATTGAGGTTCCTTACAACAACACTGAAGACAACAACAAGGCTGAAACTGAAACCCATCATCAAGGGGCTTTTCAAAATCTCACTCCCTCTTCCTCTCACTTTTCTGGGATCACTTCATCAAGGGGCTTGAACTCTTTCATGGCCATGCCGGTTTCAGATTCCAGCACAATGTATAACTCAACTGGGTTTCCTTTCCAAGACTTTAAGCCTGGCCTTAGCTTCAGTTTAGAGGGGTTTGAAAATGGCTATGGTGGTGATCTCCAAGGGATTCAAGAGGGTGAAGGGGCAAGGATCTTGTTTCCTGTAGAGGATTTGAAGTCACAGCAGATCACAAAGAATGCTGAGTTTGAGCCAAATAGAAGCCAAGGGGATTCAACTGGGTATTGGAATGGCATGCTAGGTGGTGGATCATGGTAG 870 0.4299 MDTTQWAQGIGVVNPMEGNSKPPIMEKRARPQKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRPTPASSSSSPSTPSSTKKFPDLATPQNFPQNSSQTPKIHQGQDLNLAYPPVEDYSTISKFIEVPYNNTEDNNKAETETHHQGAFQNLTPSSSHFSGITSSRGLNSFMAMPVSDSSTMYNSTGFPFQDFKPGLSFSLEGFENGYGGDLQGIQEGEGARILFPVEDLKSQQITKNAEFEPNRSQGDSTGYWNGMLGGGSW 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00722 289 ProSiteProfiles Zinc finger Dof-type profile. 37 91 IPR003851 GO:0003677|GO:0006355
Cca05g00722 289 MobiDBLite consensus disorder prediction 75 130 - -
Cca05g00722 289 Pfam Dof domain, zinc finger 34 91 IPR003851 GO:0003677|GO:0006355
Cca05g00722 289 PANTHER DOF ZINC FINGER PROTEIN DOF1.8 3 285 - -
Cca05g00722 289 MobiDBLite consensus disorder prediction 268 289 - -
Cca05g00722 289 MobiDBLite consensus disorder prediction 14 33 - -
Cca05g00722 289 ProSitePatterns Zinc finger Dof-type signature. 39 75 IPR003851 GO:0003677|GO:0006355
Cca05g00722 289 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 3 285 IPR045174 GO:0003700|GO:0006355
Cca05g00722 289 MobiDBLite consensus disorder prediction 90 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00722 Cca-Chr5 19346264 19348026 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00722 27 289 C2C2-Dof Transcription Factor Family AT3G61850 43.972 1.85e-55 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Cca05g00722 zf-Dof 1.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00722 - - qlo:115960401 385.185