Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00720 ATGGTTGTAGTGTTGAGTCCTAGTCATTCCAATTTTCCCATAGCTACAGCGCTGAGCCACGACTACAATACTAAGTCTCAAGCATCCCATTTTTCCCCTACAGCTGCAATGGCAGAACGCTTCTTTGTTGTAGTTAAAGAAGCATTCGGTATGGGTCGTTTATCAGAGTCGAAGTTGGTGCAAGAGTTGGTTCTGTACGCGGCAAGCGCAGCACTGAGTTGCTTAGTCTTGTTCGTGGGCCTCCGACAACTGGACCCAAATCGCGAGGCCTCCAAGAAGGCCCTTCAACACAAGAAGGAGATCGCCAAGCGCCTCGGTCGCCCCCTCGTTAACACAAACCCTTACGAGGATGTCATAGCATGCGATGTTATCAATCCTGACGACATTGATTTGGAGTTTAATTCTATTGGGGGCCTGGAAACAGTAAAGCAAGCTCTGTTTGAGCTTGTTATTCTGCCTCTAAAAAGACCTGACTTGTTTTCTCATGGTAAGCTTCTTGGGCCACAAAAGGGTGTCCTGTTGTATGGACCACCTGGCACAGGGAAGACCATGCTTGCCAAAGCTATTGCTAAGGAGTCTGGAGCAGTTTTCATTAATGTGAGGATATCAAACCTGATGAGCAAGTGGTTTGGAGATGCCCAGAAACTTGTGGCTGCCGTATTTAGCCTAGCTCATAAGCTCCAGCCTGCCATCATATTCATTGATGAAGTTGACAGCTTTTTGGGTCAGCGTCGTACAACAGATCACGAGGCATTGTTAAACATGAAAACTGAATTTATGGCTTTATGGGATGGATTTACTACTGATCAGAATGCTCAAGTTATGGTCCTTGCTGCCACTAATCGCCCTTCAGAACTTGATGAAGCAATACTTCGACGTCTTCCTCAGGCATTTGAAATTGGTATCCCAGACCAGAGGGAGAGGGCTGATATATTGAAGGTTATCTTGAAGGGTGAGAGGATTGAACAAAACATTGACTTTGACCATATAGCTTACTTATGTGAAGGTTACACTGGTTCGGATCTATTTGACCTCTGCAAGAAGGCTGCATATTTTCCAATTAGAGAACTGCTGGATGAAGAGAAGAAAGGGAGAAGTTCATCTGCTCCTAGACCATTGTCGCAGCTAGACTTGGAGAAGGCTCTGGCCACTTCACAGAAGACTACGGTTGCTGCAACGGAATACAATGGATCAAGTGCAGGTGATTATCAGGTTCAAGCTGCAATCAATGAACTGTCCAAGTTTGTGCTTTCTCACATGATTAATCGCCAGCATGATGCCAAAGATCTTTAA 1293 0.454 MVVVLSPSHSNFPIATALSHDYNTKSQASHFSPTAAMAERFFVVVKEAFGMGRLSESKLVQELVLYAASAALSCLVLFVGLRQLDPNREASKKALQHKKEIAKRLGRPLVNTNPYEDVIACDVINPDDIDLEFNSIGGLETVKQALFELVILPLKRPDLFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAHKLQPAIIFIDEVDSFLGQRRTTDHEALLNMKTEFMALWDGFTTDQNAQVMVLAATNRPSELDEAILRRLPQAFEIGIPDQRERADILKVILKGERIEQNIDFDHIAYLCEGYTGSDLFDLCKKAAYFPIRELLDEEKKGRSSSAPRPLSQLDLEKALATSQKTTVAATEYNGSSAGDYQVQAAINELSKFVLSHMINRQHDAKDL 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00720 430 Gene3D - 130 389 IPR027417 -
Cca05g00720 430 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 52 419 - -
Cca05g00720 430 Pfam AAA+ lid domain 324 360 IPR041569 -
Cca05g00720 430 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 133 360 IPR027417 -
Cca05g00720 430 CDD AAA 166 301 - -
Cca05g00720 430 Pfam ATPase family associated with various cellular activities (AAA) 172 301 IPR003959 GO:0005524|GO:0016887
Cca05g00720 430 SMART AAA_5 168 304 IPR003593 -
Cca05g00720 430 Gene3D - 303 383 - -
Cca05g00720 430 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-LIKE 52 419 - -
Cca05g00720 430 ProSitePatterns AAA-protein family signature. 274 293 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00720 Cca-Chr5 19295569 19314200 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00720 127 375 Calmodulin-binding Proteins AT3G56690 35.714 4.47e-39 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00720 K22530 - gmx:100791694 696.427