Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00704 ATGGCAAGTGTGCTTCTTGTACAAGGTGATTTCatgatgatgatgatgttgctaatgCTTATTCTCATCAAAAATGGGAGCGGTGAGGACGAGTGCAGGGAATTGTCTTGTGGACCTAACGAACCGCTTATTAGATTTCCCTTCAAACTCGTGAAGGGGACGCACGATGAATGTGGCGATCAACATCTTTGTCTATATTGCAATCAAAAAAATGAGACCATGCTTGTGCTACCCTCAACAAAACTCCTTGTCAGTTATATAAACTACGAAGATCACGTAATTGGGATGACTGACCCCGAAAATTGCCTTCCTAAGAAGTTTCTGCAAATCAACAATTTTGTTATTCATCATAACCAACTGGAATTAACATATGATGGACTGCTAGGAGGAGGCAACTTATTGAGCTTCTTCAACTGTTCTTCCATTGGGTATCGACACCTCAGAAACTACATGCAGTCATATTCACAAGATATGATCTCTTGTCCGATTTTCGTTTCTAGTTCAAAAGACAGTATCCTCGAATTGGATCTAACATCATGTACCAAGATGTTCGACTTCATTGCGCCAATCGACGCATACTACCTGGAGATAAATTTTGTCAAATTAAGATGGTCCCAAAAAAATTGTATTGAGTGCGAAGCAAAAGGCAAGAGATGTAAATGGAAGAACAACACTGAAGGAGACATAGAATGTTTTGACTGCAAACGGAAAAGAATCCACGTTCCCAAATCATCTATTTTCGCTACTACAGGTTCGATTCTTTTGGGGCTGGTGGCCATTGCCCTCTTTAAGATCTTCCTCTATTTTAGAAAGAAAGAAGAAGACCAAGCAAGAGTGGACAAGTTCTTAGAGGATTACAGGGCAGAGAACcctacaagatttacctacgctgatctgaaaagaatcaccggtggttttaaggaaaagttaggagaaggagctcatggggctgtattcaaaggaaaactttcaaatgagattctggtggctgtgaaggtcctcgataatactgagaaagaagggaatgagttcatcaatgaagtggcaattatgggaaaaatccaccacatcaacgtggttcgtttgcttggcttctgtgcagaagggacctatcatgctcttgtctacaatttttttccaaatggttcccttcaaagcttcatttttccaccagatgacgaggaacatttccttggctgggagaagctgcaacacattgctcatggtattgctaaagggattgagtatcttcatcaaggttgtaaccatcccattattcactttgacatcaatccgcacaatgtgttacttgatgacaactttaatccaaaaatttctgattttggcttagccaaattgtgttccaagaatcctagtttggtgtccatgacagctgctaggggaactttggggtacattgcacctgaagttttctctaggaactttgggaatgtgtcttataagtctgatatttatagttatggaatgttgttgttagaaatggttggaggaaggaaAAATGTAGACATGTCTTCAGCACATGTTTTGTATCCTGATTGGATCCATAACCTAGTTGATGGGGATGTACATATCCATGTTGAGGATGAAGGTGATGTTAAAATTGCAAAGCAACTAGCAATTGTTGGACTTTGGTGCATTCAGTGGCAGCCAGTGAACCGTCCATCCATAAAAGCTGTCCTACAAATGCTAGAAACAAGAGAGGAAGAGTCCTTAATTGTGCCTCCTAATCCATTTCAGTCACCGACTTCCACTACTACTAGTGGACTCACTTCAACAAGACGTCCTTTGGAGTTAGAAGTGATTCAAGAATGA 1833 0.258 MASVLLVQGDFMMMMMLLMLILIKNGSGEDECRELSCGPNEPLIRFPFKLVKGTHDECGDQHLCLYCNQKNETMLVLPSTKLLVSYINYEDHVIGMTDPENCLPKKFLQINNFVIHHNQLELTYDGLLGGGNLLSFFNCSSIGYRHLRNYMQSYSQDMISCPIFVSSSKDSILELDLTSCTKMFDFIAPIDAYYLEINFVKLRWSQKNCIECEAKGKRCKWKNNTEGDIECFDCKRKRIHVPKSSIFATTGSILLGLVAIALFKIFLYFRKKEEDQARVDKFLEDYRAENPTRFTYADLKRITGGFKEKLGEGAHGAVFKGKLSNEILVAVKVLDNTEKEGNEFINEVAIMGKIHHINVVRLLGFCAEGTYHALVYNFFPNGSLQSFIFPPDDEEHFLGWEKLQHIAHGIAKGIEYLHQGCNHPIIHFDINPHNVLLDDNFNPKISDFGLAKLCSKNPSLVSMTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNVDMSSAHVLYPDWIHNLVDGDVHIHVEDEGDVKIAKQLAIVGLWCIQWQPVNRPSIKAVLQMLETREEESLIVPPNPFQSPTSTTTSGLTSTRRPLELEVIQE 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00704 610 PANTHER RUST RESISTANCE KINASE LR10-RELATED 20 610 IPR045874 GO:0004672
Cca05g00704 610 MobiDBLite consensus disorder prediction 578 601 - -
Cca05g00704 610 Gene3D Phosphorylase Kinase; domain 1 277 378 - -
Cca05g00704 610 ProSiteProfiles Protein kinase domain profile. 304 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00704 610 Gene3D Transferase(Phosphotransferase) domain 1 379 580 - -
Cca05g00704 610 Pfam Wall-associated receptor kinase galacturonan-binding 32 96 IPR025287 GO:0030247
Cca05g00704 610 PANTHER RECEPTOR-LIKE KINASE 20 610 - -
Cca05g00704 610 Pfam Protein kinase domain 307 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00704 610 MobiDBLite consensus disorder prediction 582 600 - -
Cca05g00704 610 SUPERFAMILY Protein kinase-like (PK-like) 287 572 IPR011009 -
Cca05g00704 610 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00704 Cca-Chr5 18590824 18592825 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00704 11 591 Receptor kinase-like Gene Family AT1G66910 32.609 1.02e-93 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Cca05g00704 Pkinase 1.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00704 - - gmx:102662104 934.865