Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00700 ATGCCTGAACTCCGCACCAGAATAAAACAcccaacaccaacgttccatgccccaagctcaagcccaagcccaagcccaaacaccctaccccGCCAGGGGAGAACGAAAAGAGCTTCCGCTAACACCAGGAGGAACAATCGGAACACGCTCAAACGTTGTGGAATCGGTAACCGCGAATTAGAAGAGAaaccacaaccacaacgacgacaacaacaacaacaagaaGTTCCTCTGGTTAGGGTTTCCGAGGAGGAAGAGAAAGCGATGGATGATGAGTACGACAGCGGCGGGGGCCGGAGCGGCGACAAGGCTCCGGCCGCCGAGGAAGAAGGGAGCACTGCTCCCATTCCCGAGAGGGTTCAAGTAGGTGGTTCTCCGTTATACAGATTAGATAGAAAACTTGGTAAGGGAGGGTTCGGACAAGTGTATGTGGGTCGGCGACTTGGCGCCGGTGCTGGAGCGTTAGAGGTAGCTTTGAAGTTTGAACATAGGAGCAGCAAGGGGTGCAATTATGGACCTCCTTATGAGTGGCAAGTTTACAATGCATTAGGTGGTAGTCATGGCGTTCCACGAGTTCATTACAAGGGACGTCAAGGTGATTACTATGTTATGGTTATGGATATGCTTGGCCCTAGTCTGTGGGATGTTTGGAACAATAACTCAAACACGATGTCTGCGGAAATGGTAGCATGTATAGCAATTGAGGCTATCTCCATATTAGAGAAGATACACTCTAAAGGATATGTGCACGGTGACGTAAAACCTGAGAATTTTTTGCTTGGCACCCCGGGAACTCCTGACGAGAAGAAGCTTTTTCTGGTTGATCTTGGTTTAGCAACTCGATGGCGGGATAGTTCGACAGGCTTTCATGTTGAGTACGATCAACGCCCAGATGTATTTAGGGGAACAGTTCGTTATGCTAGTGTGCATGCTCATCTCGGTAGAACAGGTAGCAGGAGAGATGATTTGGAATCTCTTGCTTACACGCTAATCTTCCTTCTTCGTGGCCGGCTACCTTGGCAAGGATACCAGGGAGAAAACAAAGGATTTCTTGTCTGCAAGAAAAAGATGGCCACCTCTCCAGAGACTTTGTGTTGTGTCTGTCCTCCACCTTTTAGGCAGTTTGTGGAGTACGTGGTGAATTTGAAGTTTGATGAAGAACCAAATTATGCCAAGTATATATCACTTTTTGATGGAATTGTTGGTCCAAATCCAGACATCAGACCCATAAACACTGATGGTGCACAAAAGCTTATATATATGGTTGGACATAAGAGAGGACGATTGACTGTGGAAGAAGATGATGATGAACAACCAAAGAAGAAGGTCAGAATGGGAATGCCAGCAATGCAATGGATTAGTGTGTACAATGCTCGCCGGCCAATGAAGCAAAGGTACCATTACAATGTTGCTGACGTGCGGTTGTCCCAACACATTGAGAAGGGATACGAGGATGGGTTATTTATCAGCAGTGTAGCTTGTTGTTCTAACCTTTGGGCTCTTATTATGGATGCTGGCACGGGTTTTACTGCACAAGTTCATGAACTCTCACCCAACTTTCTTCACAAGGAATGGATAATGGAACAGTGGGAAAAGAATTATTACATTAGTGCCATAGCAGGATCTAATAATGGGAGCTCATTGGTTGTAATGTCTAAAGGGACCCAATACTTGCAGCAATCCTATAAAGTCAGTGAGTCATTTCCATTCAAATGGATCAATAAAAAATGGAGAGAAGGATTTTATGTCACTGCTATGGCCACTGCTGGGAGTAGATGGGCAATTGTTATGTCCCGTGGTGCTGGATTTTCAGACCAGGTTGTGGAACTTGATTTCCTGTATCCTAGTGAAGGCATTCATCGGAGGTGGGACAATGGCTACCGCATCACTTCAACTGCTGCTACATGGGACCAAGCTGCTTTTGTTCTTAGTGTTCCAAGAAGAAAACCTGCTGATGAAACCCAAGAGACACTCCGTACATCTGCCTTCCCTAGTACTCATGTCAAGGAAAAATGGTCTAAAAATCTCTATATTGCATCTATATGCTATGGGAGAACAGTTTCATAA 2067 0.4325 MPELRTRIKHPTPTFHAPSSSPSPSPNTLPRQGRTKRASANTRRNNRNTLKRCGIGNRELEEKPQPQRRQQQQQEVPLVRVSEEEEKAMDDEYDSGGGRSGDKAPAAEEEGSTAPIPERVQVGGSPLYRLDRKLGKGGFGQVYVGRRLGAGAGALEVALKFEHRSSKGCNYGPPYEWQVYNALGGSHGVPRVHYKGRQGDYYVMVMDMLGPSLWDVWNNNSNTMSAEMVACIAIEAISILEKIHSKGYVHGDVKPENFLLGTPGTPDEKKLFLVDLGLATRWRDSSTGFHVEYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLIFLLRGRLPWQGYQGENKGFLVCKKKMATSPETLCCVCPPPFRQFVEYVVNLKFDEEPNYAKYISLFDGIVGPNPDIRPINTDGAQKLIYMVGHKRGRLTVEEDDDEQPKKKVRMGMPAMQWISVYNARRPMKQRYHYNVADVRLSQHIEKGYEDGLFISSVACCSNLWALIMDAGTGFTAQVHELSPNFLHKEWIMEQWEKNYYISAIAGSNNGSSLVVMSKGTQYLQQSYKVSESFPFKWINKKWREGFYVTAMATAGSRWAIVMSRGAGFSDQVVELDFLYPSEGIHRRWDNGYRITSTAATWDQAAFVLSVPRRKPADETQETLRTSAFPSTHVKEKWSKNLYIASICYGRTVS 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00700 688 ProSitePatterns Protein kinases ATP-binding region signature. 134 160 IPR017441 GO:0005524
Cca05g00700 688 ProSitePatterns Serine/Threonine protein kinases active-site signature. 248 260 IPR008271 GO:0004672|GO:0006468
Cca05g00700 688 MobiDBLite consensus disorder prediction 1 124 - -
Cca05g00700 688 ProSiteProfiles Protein kinase domain profile. 128 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00700 688 Gene3D Transferase(Phosphotransferase) domain 1 99 441 - -
Cca05g00700 688 PANTHER CASEIN KINASE-RELATED 90 662 - -
Cca05g00700 688 Pfam Protein kinase domain 128 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00700 688 CDD STKc_CK1 128 397 - -
Cca05g00700 688 PANTHER - 90 662 - -
Cca05g00700 688 SMART serkin_6 128 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00700 688 SUPERFAMILY Protein kinase-like (PK-like) 128 403 IPR011009 -
Cca05g00700 688 MobiDBLite consensus disorder prediction 79 106 - -
Cca05g00700 688 MobiDBLite consensus disorder prediction 54 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00700 Cca-Chr5 18301818 18308392 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00700 127 283 EF-hand Containing Proteins AT2G17290 30.675 6.97e-09 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Cca05g00700 Pkinase 4.3e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00700 - - zju:107420390 1153.66