Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00697 ATGGATTCAGCCAAGTTCTCCCCCAGCACCGTTCACCCAGACTTATTCCCCTTCGACACCAACAAGACCAATAACTCCTCCGACCCATTCATCGTCGAGGACCTCTTCGACTTCTCCAACCACGATGATGCTGTCATCACCGACGCCACCTTTGACTCTGTCCCCGTTAACTCCACCGACTCCTCCACCGTCACCGCCGTTGAAAGCTGCAACTCCTCCTCCTTCTCCGATCCCAACCCCGCCACCCGCAACCTCTCCAACGCCAATTTCTCCGGTGACCTCTGCGTTCCGTATGATGACATAGCGGAGCTAGAATGGCTTTCGAATTTCGTGGAGGAATCGTTTTCGAGCGAGGACCTGCAGCAGTTGCAGCTGATATCGGGCATGAAGGGGCCAAACGACGACGCATCAGAGGCCCGTGGGTTCCACTCGGAGCCCACGAGGAACAGCCCGATATTCAATTCTGAAGTGTCGGTTCCAGCCAGGGCCCGGAGCAAGAGGTCCCGCGGACCCCCATGCAACTGGGCCTCGCGCCTCCTGGTGCTGTCCCCCGCGACGTCGTCCACGGAGCCCGAGGTGGTGGCTCCCAGCCCCACCTCGAGCCTGCCGGGCCCGGTCAGCGCGAAAAAGCCCGCGAAGGCGAGCCCGAGGAAGAAGGACAGCGGCGACGGGAGCGGGGGAGACGGGCGCAGGTGCCTGCACTGCGCCACGGACAAGACCCCACAGTGGCGGACCGGGCCCATGGGCCCGAAGACACTGTGCAACGCCTGCGGCGTGAGGTACAAGTCGGGGAGGCTGGTGCCGGAGTACAGGCCCGCAGCGAGCCCGACGTTCGTGCTGACGAAGCACTCGAACTCGCACCGAAAGGTGCTGGAGCTGCGAAGGCAGAAGGAGATGGTGCGGGCccagcaacaccagcaccagcaccagcagcaacagttcctacctcaccaccatcaccaGAACATGATGTTTGATGTATCCAACGGTGACGAATACTTAATCCACCAACACGTGGGACCCGATTTCCGGCAGCTGATCTAG 1044 0.5824 MDSAKFSPSTVHPDLFPFDTNKTNNSSDPFIVEDLFDFSNHDDAVITDATFDSVPVNSTDSSTVTAVESCNSSSFSDPNPATRNLSNANFSGDLCVPYDDIAELEWLSNFVEESFSSEDLQQLQLISGMKGPNDDASEARGFHSEPTRNSPIFNSEVSVPARARSKRSRGPPCNWASRLLVLSPATSSTEPEVVAPSPTSSLPGPVSAKKPAKASPRKKDSGDGSGGDGRRCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMVRAQQHQHQHQQQQFLPHHHHQNMMFDVSNGDEYLIHQHVGPDFRQLI 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00697 347 ProSitePatterns GATA-type zinc finger domain. 232 257 IPR000679 GO:0006355|GO:0043565
Cca05g00697 347 Gene3D - 228 314 IPR013088 GO:0006355|GO:0008270
Cca05g00697 347 MobiDBLite consensus disorder prediction 213 231 - -
Cca05g00697 347 PANTHER GATA TRANSCRIPTION FACTOR 19 347 - -
Cca05g00697 347 PIRSF Txn_fac_GATA_plant 5 322 IPR016679 GO:0003677|GO:0005634|GO:0045893
Cca05g00697 347 MobiDBLite consensus disorder prediction 129 171 - -
Cca05g00697 347 ProSiteProfiles GATA-type zinc finger domain profile. 226 262 IPR000679 GO:0006355|GO:0043565
Cca05g00697 347 Pfam GATA zinc finger 232 265 IPR000679 GO:0006355|GO:0043565
Cca05g00697 347 MobiDBLite consensus disorder prediction 186 204 - -
Cca05g00697 347 SMART GATA_3 226 276 IPR000679 GO:0006355|GO:0043565
Cca05g00697 347 MobiDBLite consensus disorder prediction 186 231 - -
Cca05g00697 347 CDD ZnF_GATA 231 278 IPR000679 GO:0006355|GO:0043565
Cca05g00697 347 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 227 290 - -
Cca05g00697 347 PANTHER GATA TRANSCRIPTION FACTOR 19 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00697 Cca-Chr5 18094081 18096055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00697 30 347 C2C2-Gata Transcription Factor Family AT5G25830 52.853 1.92e-97 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Cca05g00697 GATA 3.2e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00697 - - gmx:100784144 482.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00697 05 18094081 18096055 Cca05g00697 05 18094081 18096055 ECH