Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00696 atgcagaatgaggccgagctacaagctacccagaaggagctagagagggtccagaagtccttggagattgctctgaggtctaatgagacttacgctgcccaagtccgtgagttgcaggatcttgccaagtcttcccgagctcggGCTGTTATTGAAGCAGCTCTGATTGCCCCCCTTGTCAATCTTCTTCAAAATGCCGAGTTTGACATTAAAAAGGAAGCTGCTTGGGCAATCTCAAATGCTACATCGGGTGGAACTCATGATCAGATCAAGTACTTGGTTGGCCAGGGTTGCATAAAGCCTCTCTGTGATCTGCTTGTTTGCCCGGACCCAAGGATTGTCACTGTCTGTTTAGAAGGTCTAGAGAATATTCTCAAGGTTGGAGAAGCTGAGAAGAGCCTAGGTAATACTGGAGATGTCAACTTGCTGTTAAAATTCTATTGTTGGGCACTATCATATCTCTCTGATGGCACAAATGACAAAATCCAAGCAGTTATTGAGGCAGGCGTATGTGGCAGATTGGTGCAGCTCCTCATACACCCATCTCCCTCAGTGCTGATTCCCGCTCTTCGTACAGTGGGAAATATTGTGACTGGAGATGACATGCAGACTCAGAGTATCATCAACCATGGTGCACTCCCTTGCCTTTTGAACCTGTTGACACATAATCACAAAAAAAGCATCAAGAAAGAAGCTTGCTGGACTATATCAAACATTACTGCTGGAAATAAGGAACAAATACAGGTTTGGTTATGCTTCTGGGATTTTGGACTATAA 777 0.3552 MQNEAELQATQKELERVQKSLEIALRSNETYAAQVRELQDLAKSSRARAVIEAALIAPLVNLLQNAEFDIKKEAAWAISNATSGGTHDQIKYLVGQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSLGNTGDVNLLLKFYCWALSYLSDGTNDKIQAVIEAGVCGRLVQLLIHPSPSVLIPALRTVGNIVTGDDMQTQSIINHGALPCLLNLLTHNHKKSIKKEACWTISNITAGNKEQIQVWLCFWDFGL 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00696 258 Gene3D - 141 252 IPR011989 -
Cca05g00696 258 Coils Coil 7 27 - -
Cca05g00696 258 PANTHER IMPORTIN ALPHA 147 249 - -
Cca05g00696 258 SMART arm_5 158 198 IPR000225 GO:0005515
Cca05g00696 258 SMART arm_5 200 241 IPR000225 GO:0005515
Cca05g00696 258 SMART arm_5 86 126 IPR000225 GO:0005515
Cca05g00696 258 SMART arm_5 43 83 IPR000225 GO:0005515
Cca05g00696 258 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 211 246 IPR000225 GO:0005515
Cca05g00696 258 Pfam Armadillo/beta-catenin-like repeat 48 82 IPR000225 GO:0005515
Cca05g00696 258 Pfam Armadillo/beta-catenin-like repeat 201 241 IPR000225 GO:0005515
Cca05g00696 258 Pfam Armadillo/beta-catenin-like repeat 87 124 IPR000225 GO:0005515
Cca05g00696 258 Pfam Armadillo/beta-catenin-like repeat 159 197 IPR000225 GO:0005515
Cca05g00696 258 PANTHER IMPORTIN ALPHA 46 143 - -
Cca05g00696 258 PANTHER IMPORTIN SUBUNIT ALPHA 46 143 - -
Cca05g00696 258 SUPERFAMILY ARM repeat 47 246 IPR016024 -
Cca05g00696 258 Gene3D - 32 140 IPR011989 -
Cca05g00696 258 PANTHER IMPORTIN SUBUNIT ALPHA 147 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00696 Cca-Chr5 17977121 17985752 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00696 26 145 U-box Gene Family AT3G54790 34.167 8.76e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00696 K15042 - ccaj:109792905 353.984